Motif HL_35894.1 Version HL_35894.1 of this group appears in releases 3.2 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4KJI_001 | 4KJI | 0.7601 | 2 | C | RsmZ-2 | G | 5 | A | 6 | G | 8 | G | 9 | A | 10 | C | 12 | cWW | |
| 2 | HL_5CZZ_002 | 5CZZ | 0.5919 | 1 | B | RNA (73-MER) | C | 59 | A | 60 | A | 61 | A | 62 | A | 63 | G | 65 | cWW | ncSW |
| 3 | HL_5M3H_001 | 5M3H | 0.0000 | 0 | V | RNA 5'-pAGUAGUAACAAGAGGG | U | 3 | A | 4 | G | 5 | U | 6 | A | 7 | A | 8 | cWW | |
| 4 | HL_4WSB_001 | 4WSB | 0.0641 | 0 | V | Influenza A polymerase vRNA promoter 5' end | U | 3 | A | 4 | G | 5 | U | 6 | A | 7 | A | 8 | cWW | |
| 5 | HL_4WRT_001 | 4WRT | 0.0823 | 0 | V | Influenza virus polymerase vRNA promoter 5' end | U | 3 | A | 4 | G | 5 | U | 6 | A | 7 | A | 8 | cWW | ncSW |
| 6 | HL_5FMZ_001 | 5FMZ | 0.0985 | 0 | H | RNA (12-mer) | U | 3 | A | 4 | G | 5 | U | 6 | A | 7 | A | 8 | cWW | |
| 7 | HL_4V5O_051 | 4V5O | 0.8095 | 0 | BA | SSU rRNA | A | 652 | U | 653 | U | 654 | C | 655 | G | 656 | U | 657 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAGUAA | 4 |
| GAAGGAUC | 1 |
| CAAAAUG | 1 |
| AUUCGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGUA | 4 |
| AAGGAU | 1 |
| AAAAU | 1 |
| UUCG | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Basepair signature
- cWW-cSW-R-R
- Heat map statistics
- Min 0.06 | Avg 0.48 | Max 0.84
Coloring options: