Motif HL_36684.2 Version HL_36684.2 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-8 | 3-9 | 3-10 | 4-7 | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_7A0S_028 | 7A0S | 0.6063 | 3 | X | LSU rRNA | G | 1074 | C | 1075 | U | 1076 | U | 1077 | A | 1078 | G | 1079 | A | 1080 | A | 1084 | G | 1085 | C | 1086 | C | 1087 | cWW | ncSW | ntSH | |||
2 | HL_7MKY_001 | 7MKY | 0.6093 | 1 | A | RNA (66-MER) | G | 9 | U | 10 | G | 11 | C | 12||A | A | 13 | G | 14 | C | 15 | C | 16 | C | 17 | G | 18 | C | 20 | cWW | cBW | ||||
3 | HL_4UYK_001 | 4UYK | 0.4360 | 0 | R | SRP RNA | G | 21 | G | 22 | U | 23 | U | 24 | C | 25 | G | 26 | G | 27 | C | 28 | G | 29 | U | 30 | C | 31 | cWW | |||||
4 | HL_7K16_002 | 7K16 | 0.3434 | 0 | P | RNA (51-MER) | G | 27 | C | 28 | U | 29 | U | 30 | G | 31 | A | 32 | G | 33 | A | 34 | A | 35 | C | 36 | C | 37 | cWW | ncWB | ||||
5 | HL_5IB8_208 | 5IB8 | 0.0000 | 0 | 1L | tRNA | G | 30 | A | 31 | C | 32 | U | 33 | U | 34 | U | 35 | U | 36 | A | 37 | A | 38 | U | 39 | C | 40 | cWW | ntSH | ||||
6 | HL_6GSL_238 | 6GSL | 0.4536 | 0 | 3L | tRNA | G | 31 | G | 32 | C | 33 | U | 34 | A | 35 | C | 36 | G | 37 | A | 38 | A | 39 | C | 40 | C | 41 | ncWW | ncWw | ||||
7 | HL_6GSK_218 | 6GSK | 0.4699 | 0 | 3L | tRNA | C | 30 | C | 31 | U | 32 | U | 33 | G | 34 | G | 35 | U | 36 | A | 37 | A | 38 | G | 39 | G | 40 | cWW | ncSW | ntSH | |||
8 | HL_4WSM_225 | 4WSM | 0.5100 | 0 | 3L | tRNA | C | 31 | C | 32 | U | 33 | U | 34 | G | 35 | A | 36 | G | 37 | G | 38 | U | 39 | G | 40 | G | 41 | cWW | cSW | ||||
9 | HL_6DME_003 | 6DME | 0.5769 | 0 | A | ppGpp Riboswitch | G | 78 | G | 79 | A | 80 | U | 81 | A | 82 | A | 83 | A | 84 | A | 85 | G | 86 | A | 87 | C | 88 | cWW | cWW | tWH | tWH |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GCUUAGAAGCAGCC | 1 |
GUGCAGCCCGUC | 1 |
GGUUCGGCGUC | 1 |
GCUUGAGAACC | 1 |
GACUUUUAAUC | 1 |
GGCUACGAACC | 1 |
CCUUGGUAAGG | 1 |
CCUUGAGGUGG | 1 |
GGAUAAAAGAC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
CUUAGAAGCAGC | 1 |
UGCAGCCCGU | 1 |
GUUCGGCGU | 1 |
CUUGAGAAC | 1 |
ACUUUUAAU | 1 |
GCUACGAAC | 1 |
CUUGGUAAG | 1 |
CUUGAGGUG | 1 |
GAUAAAAGA | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | Updated, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (9)
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.34 | Avg 0.52 | Max 0.96
Coloring options: