Motif HL_36725.1 Version HL_36725.1 of this group appears in releases 0.1 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2F8K_001 | 2F8K | 0.2166 | 1 | Mini UNCG | B | RNA (16-mer) | U | 6 | G | 8 | A | 9 | cWW |
| 2 | HL_1S72_041 | 1S72 | 0.0000 | 2 | Mini UNCG (H) | 0 | LSU rRNA | C | 1651 | U | 1654 | G | 1655 | cWW |
| 3 | HL_2AW7_002 | 2AW7 | 1.1143 | 1 | A | 16S ribosomal RNA | C | 83 | U | 85 | G | 86 | cWW | |
| 4 | HL_2QBG_045 | 2QBG | 1.1080 | 1 | B | 23S rRNA | C | 1728 | C | 1730 | G | 1731 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUGA | 1 |
| CCAUG | 1 |
| CUUG | 1 |
| CUCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UG | 1 |
| CAU | 1 |
| UU | 1 |
| UC | 1 |
Release history
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_36725.1 | Only in the child motif |
|---|---|---|---|
| HL_19905.1 Compare | HL_2AW7_002, HL_2QBG_045 | HL_1S72_041, HL_2F8K_001 | |
| HL_75759.1 Compare | HL_1S72_041, HL_2F8K_001 | HL_2AW7_002, HL_2QBG_045 | HL_4A1B_039, HL_3U5F_007, HL_3V2F_037, HL_2ZJR_039, HL_3V2F_009, HL_2QBG_041, HL_3U5H_040, HL_3U5H_072 |
- Annotations
-
- (2)
- Mini UNCG (H) (1)
- Mini UNCG (1)
- Basepair signature
- Heat map statistics
- Min 0.22 | Avg 0.67 | Max 1.21
Coloring options: