Motif HL_75759.1 Version HL_75759.1 of this group appears in releases 0.3 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3U5H_072 | 3U5H | 0.6095 | 0 | 5 | LSU rRNA | C | 3350 | U | 3351 | U | 3352 | G | 3353 | cWW | |
| 2 | HL_2F8K_001 | 2F8K | 0.4661 | 0 | Mini UNCG | B | RNA (16-mer) | U | 6 | U | 7 | G | 8 | A | 9 | cWW |
| 3 | HL_3U5H_040 | 3U5H | 0.2793 | 1 | 5 | LSU rRNA | C | 1792 | G | 1794 | U | 1795 | G | 1796 | cWW | |
| 4 | HL_4A1B_039 | 4A1B | 0.2019 | 1 | 1 | LSU rRNA | C | 1818 | U | 1820 | U | 1821 | G | 1822 | cWW | |
| 5 | HL_1S72_041 | 1S72 | 0.0000 | 1 | Mini UNCG (H) | 0 | LSU rRNA | C | 1651 | A | 1653 | U | 1654 | G | 1655 | cWW |
| 6 | HL_3U5F_007 | 3U5F | 0.3931 | 0 | 6 | SSU rRNA | C | 276 | U | 277 | U | 278 | G | 279 | cWW | |
| 7 | HL_2ZJR_039 | 2ZJR | 0.3660 | 0 | Mini UNCG (H) | X | LSU rRNA | C | 1581 | A | 1582 | A | 1583 | G | 1584 | cWW |
| 8 | HL_3V2F_037 | 3V2F | 0.2686 | 0 | A | LSU rRNA | C | 1565 | A | 1566 | A | 1567 | G | 1568 | cWW | |
| 9 | HL_2QBG_041 | 2QBG | 0.3017 | 0 | B | LSU rRNA | C | 1565 | A | 1566 | G | 1567 | G | 1568 | cWW | |
| 10 | HL_3V2F_009 | 3V2F | 0.5121 | 0 | A | LSU rRNA | C | 271|||J | U | 271|||K | U | 271|||L | G | 271|||M | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUG | 3 |
| CAAG | 2 |
| UUGA | 1 |
| CCGUG | 1 |
| CCUUG | 1 |
| CCAUG | 1 |
| CAGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UU | 3 |
| AA | 2 |
| UG | 1 |
| CGU | 1 |
| CUU | 1 |
| CAU | 1 |
| AG | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 |
|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_75759.1 | Only in the parent motif |
|---|---|---|---|
| HL_36725.1 Compare | HL_1S72_041, HL_2F8K_001 | HL_4A1B_039, HL_3U5F_007, HL_3V2F_037, HL_2ZJR_039, HL_3V2F_009, HL_2QBG_041, HL_3U5H_040, HL_3U5H_072 | HL_2AW7_002, HL_2QBG_045 |
| HL_58751.2 Compare | HL_2QBG_041, HL_2ZJR_039 | HL_1S72_041, HL_4A1B_039, HL_3U5F_007, HL_3V2F_037, HL_3V2F_009, HL_2F8K_001, HL_3U5H_040, HL_3U5H_072 | HL_1ZSE_001, HL_2B2D_001, HL_3PYO_039, HL_1FJG_005, HL_2OZB_001, HL_6MSF_001 |
Children motifs
| Child motif | Common motif instances | Only in HL_75759.1 | Only in the child motif |
|---|---|---|---|
| HL_75759.2 Compare | HL_1S72_041, HL_4A1B_039, HL_3U5F_007, HL_3V2F_037, HL_3V2F_009, HL_2QBG_041, HL_3U5H_040, HL_3U5H_072 | HL_2F8K_001, HL_2ZJR_039 | HL_4IOA_038, HL_3U5H_069 |
| HL_19905.2 Compare | HL_2F8K_001 | HL_1S72_041, HL_4A1B_039, HL_3U5F_007, HL_3V2F_037, HL_2ZJR_039, HL_3V2F_009, HL_2QBG_041, HL_3U5H_040, HL_3U5H_072 | HL_2AW7_002, HL_2QBG_045 |
- Annotations
-
- (7)
- Mini UNCG (H) (2)
- Mini UNCG (1)
- Basepair signature
- cWW-R
- Heat map statistics
- Min 0.10 | Avg 0.45 | Max 0.89
Coloring options: