Motif HL_37462.1 Version HL_37462.1 of this group appears in releases 3.85 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4Z7K_001 | 4Z7K | 0.0000 | 6 | C | RNA/DNA Hybrid (31-MER) | C | 17 | A | 18 | A | 19 | A | 21 | A | 27 | G | 28 | cWW | |
| 2 | HL_4Z7L_003 | 4Z7L | 0.2295 | 6 | I | RNA (14-mer) | C | 17 | A | 18 | A | 19 | A | 21 | A | 27 | G | 28 | cWW | |
| 3 | HL_8UO6_006 | 8UO6 | 0.8375 | 0 | B | HIV-1 Rev Response Element Stem-Loop II with tRNA scaffold | C | 49 | A | 50 | A | 51 | U | 52 | G | 53 | G | 54 | cWW | |
| 4 | HL_6U8D_001 | 6U8D | 0.8184 | 0 | A | JIIIabc RNA (68-MER) | G | 161 | A | 162 | G | 163 | U | 164 | A | 165 | C | 166 | cWW | ncsS |
| 5 | HL_8UO6_002 | 8UO6 | 0.8188 | 0 | A | HIV-1 Rev Response Element Stem-Loop II with tRNA scaffold | C | 49 | A | 50 | A | 51 | U | 52 | G | 53 | G | 54 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAAAUAACAAG | 2 |
| CAAUGG | 2 |
| GAGUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAAAUAACAA | 2 |
| AAUG | 2 |
| AGUA | 1 |
- Annotations
-
- (5)
- Basepair signature
- cWW-F-F-F-F
- Heat map statistics
- Min 0.23 | Avg 0.50 | Max 0.84
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