Motif HL_38901.1 Version HL_38901.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3RG5_005 | 3RG5 | 0.2355 | 1 | tRNA D-loop | B | Selenocysteine transfer RNA | G | 15 | U | 16 | G | 19 | U | 20 | C | 20|||A | cWW | cSH |
| 2 | HL_3W3S_001 | 3W3S | 0.1850 | 1 | tRNA D-loop | B | Selenocysteine transfer RNA | C | 15 | U | 16 | G | 19 | U | 20 | G | 20|||A | cWW | cSH |
| 3 | HL_3AM1_001 | 3AM1 | 0.0000 | 1 | tRNA D-loop | B | ASL-truncated tRNA | U | 18 | U | 19 | G | 21 | U | 22 | A | 23 | cWW | cSH |
| 4 | HL_3ADD_001 | 3ADD | 0.2334 | 1 | tRNA D-loop | C | Selenocysteine transfer RNA | G | 15 | U | 16 | G | 19 | U | 20 | C | 20|||A | cWW | cSH |
| 5 | HL_8P9A_219 | 8P9A | 0.6098 | 1 | sR | SSU rRNA | C | 1359 | A | 1360 | U | 1362 | U | 1363 | G | 1364 | cWW | ||
| 6 | HL_4KR9_004 | 4KR9 | 0.9092 | 1 | X | RNA (39-MER) | G | 19 | G | 20 | A | 22 | A | 23 | C | 24 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUGGUC | 2 |
| CUGGUG | 1 |
| UUGGUA | 1 |
| CAUUUG | 1 |
| GGAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGGU | 4 |
| AUUU | 1 |
| GAAA | 1 |
- Annotations
-
- tRNA D-loop (4)
- (2)
- Basepair signature
- cWW-F-cSH
- Heat map statistics
- Min 0.17 | Avg 0.46 | Max 0.92
Coloring options: