Motif HL_39334.2 Version HL_39334.2 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 5-7 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5TBW_020 | 5TBW | 0.0893 | 3 | 1 | LSU rRNA | A | 876 | C | 877 | G | 878 | G | 880 | C | 881 | A | 882 | U | 885 | cWW | tSW | ncWS | |
| 2 | HL_4V8P_104 | 4V8P | 0.0000 | 3 | D1 | LSU rRNA | A | 901 | C | 902 | G | 903 | G | 905 | C | 906 | A | 907 | U | 910 | cWW | ntSW | ncWS | |
| 3 | HL_4Y4O_125 | 4Y4O | 0.2362 | 3 | 2A | LSU rRNA | G | 744 | G | 745 | A | 746 | G | 748 | C | 749 | A | 750 | C | 753 | cWW | tSW | cWS | |
| 4 | HL_4WF9_023 | 4WF9 | 0.3042 | 3 | X | LSU rRNA | C | 789 | G | 790 | U | 791 | G | 793 | A | 794 | A | 795 | G | 798 | cWW | tSW | cWS | |
| 5 | HL_4IOA_022 | 4IOA | 0.3536 | 3 | X | LSU rRNA | U | 757 | G | 758 | C | 759 | G | 761 | A | 762 | A | 763 | A | 766 | cWW | tSW | ncWS | |
| 6 | HL_4V9F_024 | 4V9F | 0.2560 | 3 | 0 | LSU rRNA | U | 837 | C | 838 | C | 839 | A | 841 | C | 842 | A | 843 | A | 846 | cWW | tSW | cWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACGUGCAAAU | 2 |
| GGAUGCAAAC | 1 |
| CGUUGAAAAG | 1 |
| UGCUGAAACA | 1 |
| UCCUACAAUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGUGCAAA | 2 |
| GAUGCAAA | 1 |
| GUUGAAAA | 1 |
| GCUGAAAC | 1 |
| CCUACAAU | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
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