Motif HL_39872.1 Version HL_39872.1 of this group appears in releases 0.3 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1S72_069 | 1S72 | 0.2850 | 1 | 0 | LSU rRNA | G | 2836 | A | 2838 | C | 2839 | A | 2840 | A | 2841 | G | 2842 | A | 2843 | C | 2844 | cWW | cSW |
| 2 | HL_3U5H_071 | 3U5H | 0.2074 | 1 | 5 | 25S rRNA | G | 3303 | A | 3305 | U | 3306 | A | 3307 | C | 3308 | G | 3309 | A | 3310 | C | 3311 | cWW | cSW |
| 3 | HL_4A1B_070 | 4A1B | 0.1738 | 1 | 1 | 26S RRNA | G | 3263 | A | 3265 | G | 3266 | A | 3267 | C | 3268 | G | 3269 | A | 3270 | C | 3271 | cWW | cSW |
| 4 | HL_2QBG_070 | 2QBG | 0.0000 | 1 | B | 23S rRNA | G | 2819 | A | 2821 | G | 2822 | A | 2823 | C | 2824 | G | 2825 | A | 2826 | C | 2827 | cWW | cSW |
| 5 | HL_3V2F_066 | 3V2F | 0.3786 | 1 | A | 23S Ribosomal RNA | G | 2819 | A | 2821 | G | 2822 | A | 2823 | C | 2824 | C | 2825 | A | 2826 | C | 2827 | cWW | cSW |
| 6 | HL_2ZJR_066 | 2ZJR | 0.4018 | 1 | X | LSU rRNA | G | 2794 | A | 2796 | G | 2797 | A | 2798 | C | 2799 | C | 2800 | A | 2801 | C | 2802 | cWW | cSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAGACCAC | 2 |
| GUACAAGAC | 1 |
| GUAUACGAC | 1 |
| GUAGACGAC | 1 |
| GAAGACGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAGACCA | 2 |
| UACAAGA | 1 |
| UAUACGA | 1 |
| UAGACGA | 1 |
| AAGACGA | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 |
|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_39872.1 | Only in the parent motif |
|---|---|---|---|
| HL_54261.1 Compare | HL_1S72_069, HL_2QBG_070, HL_2ZJR_066 | HL_4A1B_070, HL_3U5H_071, HL_3V2F_066 | HL_3O58_071, HL_3PYO_068 |
Children motifs
| Child motif | Common motif instances | Only in HL_39872.1 | Only in the child motif |
|---|---|---|---|
| HL_39872.2 Compare | HL_4A1B_070, HL_1S72_069, HL_2QBG_070, HL_3U5H_071, HL_3V2F_066 | HL_2ZJR_066 | HL_4IOA_067 |
- Annotations
-
- (6)
- Basepair signature
- cWW-cSW-R-R-R-R
- Heat map statistics
- Min 0.17 | Avg 0.28 | Max 0.52
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