Motif HL_40039.1 Version HL_40039.1 of this group appears in releases 3.87 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 1-2 | ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4WF9_037 | 4WF9 | 0.4343 | 2 | Mini UNCG | X | LSU rRNA | C | 1612 | G | 1615 | cWW |
| 2 | HL_6AAX_001 | 6AAX | 0.4456 | 4 | Mini UNCG | B | RNA (28-mer) | U | 933 | A | 938 | cWW |
| 3 | HL_5TBW_022 | 5TBW | 0.3601 | 4 | Externally structured | 1 | LSU rRNA | C | 958 | G | 963 | cWW |
| 4 | HL_5E08_001 | 5E08 | 0.1639 | 4 | N | RNA | C | 6 | G | 11 | cWW | |
| 5 | HL_2Y8W_001 | 2Y8W | 0.0000 | 4 | B | RNA (20-mer) | C | 11 | G | 16 | cWW | |
| 6 | HL_5B2P_003 | 5B2P | 0.4243 | 3 | B | Guide RNA | A | 64 | U | 68 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAG | 1 |
| UGGAAA | 1 |
| CCUCAG | 1 |
| CAUAGG | 1 |
| CGCGUG | 1 |
| AUUUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GA | 1 |
| GGAA | 1 |
| CUCA | 1 |
| AUAG | 1 |
| GCGU | 1 |
| UUU | 1 |
Release history
| Release | 3.87 |
|---|---|
| Date | 2024-08-14 |
| Status | New id, > 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Mini UNCG (2)
- Externally structured (1)
- Basepair signature
- cWW
- Heat map statistics
- Min 0.16 | Avg 0.38 | Max 0.67
Coloring options: