Motif HL_40210.1 Version HL_40210.1 of this group appears in releases 3.85 to 3.85
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7Z4D_003 | 7Z4D | 0.4227 | 0 | GNRA | A | tracrRNA | U | 72 | G | 73 | A | 74 | A | 75 | A | 76 | A | 77 | cWW | |
| 2 | HL_4V9F_022 | 4V9F | 0.3355 | 0 | GNRA | 0 | LSU rRNA | U | 733 | U | 734 | C | 735 | A | 736 | A | 737 | G | 738 | cWW | |
| 3 | HL_8DP3_003 | 8DP3 | 0.0000 | 0 | GNRA | R | Enterovirus 5' cloverleaf cis-acting replication element | U | 62 | C | 63 | A | 64 | C | 65 | C | 66 | G | 67 | cWW | |
| 4 | HL_4LFB_002 | 4LFB | 0.2810 | 1 | A | SSU rRNA | G | 80 | U | 81 | U | 83 | U | 84 | A | 88 | C | 89 | cWW | ||
| 5 | HL_5J7L_192 | 5J7L | 0.4632 | 4 | DA | LSU rRNA | U | 2404 | G | 2405 | G | 2410 | A | 2411 | A | 2412 | G | 2413 | cWW | tSH | |
| 6 | HL_7RQB_059 | 7RQB | 0.4892 | 4 | 1A | LSU rRNA | C | 2404 | G | 2405 | G | 2410 | A | 2411 | A | 2412 | G | 2413 | cWW | tSH | |
| 7 | HL_4WF9_055 | 4WF9 | 0.5184 | 4 | X | LSU rRNA | C | 2431 | G | 2432 | G | 2437 | A | 2438 | A | 2439 | G | 2440 | cWW | tSH | |
| 8 | HL_7A0S_058 | 7A0S | 0.5731 | 4 | X | LSU rRNA | C | 2383 | G | 2384 | G | 2389 | A | 2390 | A | 2391 | G | 2392 | cWW | tSH | |
| 9 | HL_7KGA_004 | 7KGA | 0.9369 | 6 | B | Flavivirus DB element | U | 53 | A | 54 | U | 60 | G | 62 | A | 63 | G | 64 | cWW | tSH | |
| 10 | HL_7KGA_002 | 7KGA | 0.9807 | 6 | A | Flavivirus DB element | U | 53 | A | 54 | A | 61 | G | 62 | A | 63 | G | 64 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUGUGGAAG | 2 |
| UAUCGGUUAGAG | 2 |
| UGAAAA | 1 |
| UUCAAG | 1 |
| UCACCG | 1 |
| GUUUUAC | 1 |
| UGAAUGGAAG | 1 |
| CGCAUGGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUGUGGAA | 2 |
| AUCGGUUAGA | 2 |
| GAAA | 1 |
| UCAA | 1 |
| CACC | 1 |
| UUUUA | 1 |
| GAAUGGAA | 1 |
| GCAUGGAA | 1 |
Release history
| Release | 3.85 |
|---|---|
| Date | 2024-06-19 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- GNRA (3)
- Basepair signature
- cWW-tSH-F-F
- Heat map statistics
- Min 0.13 | Avg 0.47 | Max 0.98
Coloring options: