Motif HL_41019.1 Version HL_41019.1 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3PDR_003 | 3PDR | 0.4708 | 0 | X | M-box riboswitch (ykoK leader) | G | 127 | A | 128 | U | 129 | G | 130 | C | 131 | U | 132 | U | 133 | G | 134 | U | 135 | C | 136 | cWW | ||
| 2 | HL_387D_001 | 387D | 0.0000 | 0 | A | RNA Pseudoknot | G | 4 | A | 5 | A | 6 | G | 7 | U | 8 | G | 9 | C | 10 | A | 11 | A | 12 | C | 13 | cWW | tWW | |
| 3 | HL_6XKO_003 | 6XKO | 0.5501 | 0 | A | PreQ1-III riboswitch | G | 63 | C | 64 | U | 65 | G | 66 | G | 67 | C | 68 | G | 69 | G | 70 | U | 71 | C | 72 | cWW | ||
| 4 | HL_3MJA_001 | 3MJA | 0.5270 | 0 | Anticodon loop related | B | Domain 3 of the cricket paralysis virus intergenic region IRES RNA | A | 6184 | U | 6185 | U | 6186 | A | 6187 | G | 6188 | G | 6189 | U | 6190 | A | 6191 | G | 6192 | U | 6193 | cWW | |
| 5 | HL_7KGA_001 | 7KGA | 0.7051 | 0 | A | Flavivirus DB element | U | 22 | C | 23 | A | 24 | A | 25 | G | 26 | C | 27 | C | 28 | U | 29 | A | 30 | G | 31 | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUGCUUGUC | 1 |
| GAAGUGCAAC | 1 |
| GCUGGCGGUC | 1 |
| AUUAGGUAGU | 1 |
| UCAAGCCUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUGCUUGU | 1 |
| AAGUGCAA | 1 |
| CUGGCGGU | 1 |
| UUAGGUAG | 1 |
| CAAGCCUA | 1 |
- Annotations
-
- (4)
- Anticodon loop related (1)
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.47 | Avg 0.50 | Max 0.81
Coloring options: