Motif HL_42998.1 Version HL_42998.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8P9A_138 | 8P9A | 0.3123 | 0 | AR | LSU rRNA | G | 1148 | G | 1149 | A | 1150 | U | 1151 | G | 1152 | A | 1153 | A | 1154 | C | 1155 | cWW |
| 2 | HL_4V9F_029 | 4V9F | 0.2440 | 0 | 0 | LSU rRNA | G | 1076 | G | 1077 | A | 1078 | A | 1079 | C | 1080 | A | 1081 | A | 1082 | C | 1083 | cWW |
| 3 | HL_9DFE_026 | 9DFE | 0.2311 | 0 | 1A | LSU rRNA | G | 978 | G | 979 | A | 980 | A | 981 | C | 982 | A | 983 | A | 984 | C | 985 | cWW |
| 4 | HL_7A0S_027 | 7A0S | 0.1894 | 0 | X | LSU rRNA | G | 989 | A | 990 | A | 991 | A | 992 | C | 993 | A | 994 | A | 995 | C | 996 | cWW |
| 5 | HL_5J7L_160 | 5J7L | 0.0000 | 0 | DA | LSU rRNA | G | 978 | A | 979 | A | 980 | A | 981 | C | 982 | A | 983 | A | 984 | C | 985 | cWW |
| 6 | HL_4WF9_028 | 4WF9 | 0.0905 | 0 | X | LSU rRNA | G | 1022 | A | 1023 | A | 1024 | A | 1025 | C | 1026 | A | 1027 | G | 1028 | C | 1029 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAACAAC | 2 |
| GAAACAAC | 2 |
| GGAUGAAC | 1 |
| GAAACAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAACAA | 2 |
| AAACAA | 2 |
| GAUGAA | 1 |
| AAACAG | 1 |
- Annotations
-
- (6)
- Basepair signature
- cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.09 | Avg 0.20 | Max 0.41
Coloring options: