Motif HL_43667.1 Version HL_43667.1 of this group appears in releases 3.77 to 3.83
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4WSM_208 | 4WSM | 0.0000 | 9 | 1K | tRNA | U | 11 | G | 12 | G | 13 | A | 23 | C | 24 | A | 25 | ncWW | ncWW | |
| 2 | HL_7VYX_001 | 7VYX | 0.5528 | 2 | C | sgRNA | A | 26 | A | 27 | G | 28 | U | 34 | C | 35 | U | 36 | ncWW | ncWW | ncWWa |
| 3 | HL_7E8O_002 | 7E8O | 0.5652 | 0 | X | tRNA | G | 29 | A | 30 | U | 31 | U | 37 | U | 38 | C | 39 | cWW | ncWW | |
| 4 | HL_7A0S_045 | 7A0S | 0.8880 | 7 | X | LSU rRNA | G | 1767 | U | 1768 | U | 1769 | A | 1776 | U | 1778 | C | 1779 | cWW | ncwW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGGAAUUGGUAGACA | 1 |
| AAGUUUCU | 1 |
| GAUUUC | 1 |
| GUUUACCAAAAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGAAUUGGUAGAC | 1 |
| AGUUUC | 1 |
| AUUU | 1 |
| UUUACCAAAAU | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 |
|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-cWW-F-F
- Heat map statistics
- Min 0.36 | Avg 0.48 | Max 0.90
Coloring options: