Motif HL_44926.1 Version HL_44926.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | |||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_4O26_001 | 4O26 | 0.9347 | 2 | E | Telomerase TR | C | 186 | C | 188 | G | 190 | cWW | |
2 | HL_8C3A_013 | 8C3A | 0.4126 | 3 | 1 | LSU rRNA | U | 597 | U | 598 | A | 602 | cWW | |
3 | HL_5AH5_007 | 5AH5 | 0.2802 | 2 | D | tRNA | C | 46|||A | C | 46|||C | G | 46|||E | cWW | |
4 | HL_8C3A_198 | 8C3A | 0.2422 | 1 | CM | SSU rRNA | C | 274 | U | 276 | G | 277 | cWW | |
5 | HL_6CZR_089 | 6CZR | 0.3805 | 2 | 1a | SSU rRNA | G | 822 | C | 824 | C | 826 | cWW | |
6 | HL_4LFB_005 | 4LFB | 0.2218 | 2 | A | SSU rRNA | C | 201 | U | 203 | G | 216 | cWW | |
7 | HL_4YAZ_004 | 4YAZ | 0.0000 | 2 | R | Cyclic di-GMP-I riboswitch | C | 56 | C | 58 | G | 60 | cWW | |
8 | HL_7A0S_029 | 7A0S | 0.3018 | 5 | X | LSU rRNA | C | 1103 | G | 1104 | G | 1110 | cWW | |
9 | HL_4V88_198 | 4V88 | 0.3621 | 3 | A6 | SSU rRNA | C | 491 | A | 492 | G | 496 | cWW | |
10 | HL_5TBW_039 | 5TBW | 0.4170 | 3 | GNRA related | 1 | LSU rRNA | A | 1760 | C | 1761 | U | 1765 |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CUCGG | 1 |
UUUUUA | 1 |
CUCUG | 1 |
CUUG | 1 |
GUCUC | 1 |
CUUUG | 1 |
CCCUG | 1 |
CGUAAUAG | 1 |
CAUUCG | 1 |
ACCUUU | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UCU | 2 |
UCG | 1 |
UUUU | 1 |
UU | 1 |
UUU | 1 |
CCU | 1 |
GUAAUA | 1 |
AUUC | 1 |
CCUU | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, > 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (9)
- GNRA related (1)
- Basepair signature
- cWW-F
- Heat map statistics
- Min 0.11 | Avg 0.48 | Max 0.96
Coloring options: