Motif HL_44926.1 Version HL_44926.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4O26_001 | 4O26 | 0.9347 | 2 | E | C | 186 | C | 188 | G | 190 | cWW | |
| 2 | HL_8C3A_013 | 8C3A | 0.4126 | 3 | 1 | U | 597 | U | 598 | A | 602 | cWW | |
| 3 | HL_5AH5_007 | 5AH5 | 0.2802 | 2 | Mini UNCG | D | C | 46|||A | C | 46|||C | G | 46|||E | cWW |
| 4 | HL_8C3A_198 | 8C3A | 0.2422 | 1 | Mini UNCG | CM | C | 274 | U | 276 | G | 277 | cWW |
| 5 | HL_6CZR_089 | 6CZR | 0.3805 | 2 | Mini UNCG | 1a | G | 822 | C | 824 | C | 826 | cWW |
| 6 | HL_4LFB_005 | 4LFB | 0.2218 | 2 | Mini UNCG | A | C | 201 | U | 203 | G | 216 | cWW |
| 7 | HL_4YAZ_004 | 4YAZ | 0.0000 | 2 | Mini UNCG | R | C | 56 | C | 58 | G | 60 | cWW |
| 8 | HL_7A0S_029 | 7A0S | 0.3018 | 5 | X | C | 1103 | G | 1104 | G | 1110 | cWW | |
| 9 | HL_4V88_198 | 4V88 | 0.3621 | 3 | A6 | C | 491 | A | 492 | G | 496 | cWW | |
| 10 | HL_5TBW_039 | 5TBW | 0.4170 | 3 | GNRA related | 1 | A | 1760 | C | 1761 | U | 1765 |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUCGG | 1 |
| UUUUUA | 1 |
| CUCUG | 1 |
| CUUG | 1 |
| GUCUC | 1 |
| CUUUG | 1 |
| CCCUG | 1 |
| CGUAAUAG | 1 |
| CAUUCG | 1 |
| ACCUUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCU | 2 |
| UCG | 1 |
| UUUU | 1 |
| UU | 1 |
| UUU | 1 |
| CCU | 1 |
| GUAAUA | 1 |
| AUUC | 1 |
| CCUU | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, > 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Mini UNCG (5)
- (4)
- GNRA related (1)
- Basepair signature
- cWW-F
- Heat map statistics
- Min 0.11 | Avg 0.48 | Max 0.96
Coloring options: