Motif HL_45598.1 Version HL_45598.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | |||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_8C3A_209 | 8C3A | 0.4446 | 3 | CM | SSU rRNA | C | 762 | U | 765 | G | 767 | cWW |
2 | HL_4OOG_001 | 4OOG | 0.4321 | 3 | D | 34-mer RNA | G | 14 | U | 17 | C | 19 | cWW |
3 | HL_4ILM_002 | 4ILM | 0.4824 | 4 | C | RNA (16-mer) | U | 8 | A | 12 | A | 14 | cWW |
4 | HL_4ILL_001 | 4ILL | 0.4959 | 4 | R | RNA (24-mer) | U | 8 | A | 12 | A | 14 | cWW |
5 | HL_2PJP_001 | 2PJP | 0.1645 | 1 | B | SECIS RNA | G | 22 | U | 24 | C | 25 | cWW |
6 | HL_6M0X_002 | 6M0X | 0.1119 | 1 | B | RNA (71-MER) | U | 56 | C | 58 | A | 59 | cWW |
7 | HL_6U8D_003 | 6U8D | 0.0000 | 1 | A | JIIIabc RNA (68-MER) | C | 232 | U | 234 | G | 235 | cWW |
8 | HL_2UWM_002 | 2UWM | 0.1076 | 1 | D | RNA (23-mer) | G | 22 | U | 24 | C | 25 | cWW |
9 | HL_8VM8_002 | 8VM8 | 0.2003 | 2 | R | RNA (93-MER) | C | 39 | U | 41 | G | 43 | cWW |
10 | HL_8C3A_004 | 8C3A | 0.2214 | 2 | 1 | LSU rRNA | C | 131 | U | 133 | G | 135 | cWW |
11 | HL_5TBW_004 | 5TBW | 0.2082 | 2 | 1 | LSU rRNA | C | 132 | U | 134 | G | 136 | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UACUAUA | 2 |
GGUC | 2 |
CCUUUG | 1 |
GAGUCC | 1 |
UUCA | 1 |
CGUG | 1 |
CAUUG | 1 |
CUUUG | 1 |
CUUCG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GU | 3 |
ACUAU | 2 |
CUUU | 1 |
AGUC | 1 |
UC | 1 |
AUU | 1 |
UUU | 1 |
UUC | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, > 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.Coloring options: