Motif HL_46903.1 Version HL_46903.1 of this group appears in releases 1.14 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1VW3_039 | 1VW3 | 0.0000 | 0 | A | 21S ribosomal RNA | A | 2196 | A | 2197 | U | 2198 | U | 2199 | C | 2200 | U | 2201 | cWW | cWW |
| 2 | HL_3QSY_002 | 3QSY | 0.9495 | 3 | D | tRNA | G | 31 | C | 32 | A | 35 | U | 36 | A | 38 | C | 39 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAUUCU | 1 |
| GCUCAUAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUUC | 1 |
| CUCAUAA | 1 |
Release history
| Release | 1.14 |
|---|---|
| Date | 2014-04-27 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_46903.1 | Only in the parent motif |
|---|---|---|---|
| HL_07915.1 Compare | HL_3QSY_002 | HL_1VW3_039 |
Children motifs
| Child motif | Common motif instances | Only in HL_46903.1 | Only in the child motif |
|---|---|---|---|
| HL_84967.1 Compare | HL_3QSY_002 | HL_1VW3_039 | HL_4BPP_035 |
| HL_66677.1 Compare | HL_1VW3_039 | HL_3QSY_002 | HL_3IVK_008, HL_4FAW_009 |
- Annotations
-
- (2)
- Basepair signature
- cWW-R-R-R
- Heat map statistics
- Min 0.95 | Avg 0.47 | Max 0.95
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