Motif HL_84967.1 Version HL_84967.1 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4BPP_035 | 4BPP | 0.0000 | 0 | A | 18S RRNA | A | 1660 | G | 1661 | C | 1662 | A | 1663 | A | 1664 | U | 1665 | ncWW |
| 2 | HL_3QSY_002 | 3QSY | 0.9708 | 3 | D | tRNA | G | 31 | C | 32 | A | 35 | U | 36 | A | 38 | C | 39 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGCAAU | 1 |
| GCUCAUAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCAA | 1 |
| CUCAUAA | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-15 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in HL_84967.1 | Only in the parent motif |
|---|---|---|---|
| HL_68697.3 Compare | HL_4BPP_035 | HL_3QSY_002 | HL_4NVV_063, HL_4FAW_009 |
| HL_46903.1 Compare | HL_3QSY_002 | HL_4BPP_035 | HL_1VW3_039 |
Children motifs
| Child motif | Common motif instances | Only in HL_84967.1 | Only in the child motif |
|---|---|---|---|
| HL_46388.1 Compare | HL_4BPP_035 | HL_3QSY_002 | HL_4IOA_029 |
| HL_89482.2 Compare | HL_3QSY_002 | HL_4BPP_035 | HL_2GDI_001, HL_2GDI_003, HL_1FJG_014, HL_4LX6_002, HL_1Y26_002, HL_3AL0_002, HL_3LA5_002, HL_3FO4_002, HL_2AW7_014 |
- Annotations
-
- (2)
- Basepair signature
- cWW-R-R-R
- Heat map statistics
- Min 0.97 | Avg 0.49 | Max 0.97
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