Motif HL_66677.1 Version HL_66677.1 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4FAW_009 | 4FAW | 0.7297 | 0 | A | Group II catalytic intron D1-D4-3 | C | 368 | G | 369 | A | 370 | A | 371 | C | 372 | G | 373 | cWW | tSW |
| 2 | HL_1VW3_039 | 1VW3 | 0.0000 | 0 | A | 21S ribosomal RNA | A | 2196 | A | 2197 | U | 2198 | U | 2199 | C | 2200 | U | 2201 | cWW | cWW |
| 3 | HL_3IVK_008 | 3IVK | 0.8859 | 1 | C | class I ligase product | G | 59 | A | 61 | A | 62 | C | 63 | A | 64 | C | 65 | cWW | tSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAACG | 1 |
| AAUUCU | 1 |
| GAAACAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAC | 1 |
| AUUC | 1 |
| AAACA | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-15 |
| Status | > 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in HL_66677.1 | Only in the parent motif |
|---|---|---|---|
| HL_68697.3 Compare | HL_4FAW_009 | HL_3IVK_008, HL_1VW3_039 | HL_4NVV_063, HL_4BPP_035 |
| HL_46903.1 Compare | HL_1VW3_039 | HL_3IVK_008, HL_4FAW_009 | HL_3QSY_002 |
| HL_57843.1 Compare | HL_3IVK_008 | HL_1VW3_039, HL_4FAW_009 |
Children motifs
| Child motif | Common motif instances | Only in HL_66677.1 | Only in the child motif |
|---|---|---|---|
| HL_66677.2 Compare | HL_3IVK_008, HL_1VW3_039, HL_4FAW_009 | HL_4KZD_001 |
- Annotations
-
- (3)
- Basepair signature
- cWW-tSW-R-R
- Heat map statistics
- Min 0.73 | Avg 0.56 | Max 0.90
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