Motif HL_47784.1 Version HL_47784.1 of this group appears in releases 1.0 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-9 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2XZM_001 | 2XZM | 0.3412 | 0 | A | G | 7 | U | 8 | U | 9 | G | 10 | A | 11 | U | 12 | C | 13 | C | 14 | U | 15 | G | 16 | C | 17 | cWW | ntWH |
| 2 | HL_3U5F_001 | 3U5F | 0.2613 | 0 | 6 | G | 7 | U | 8 | U | 9 | G | 10 | A | 11 | U | 12 | C | 13 | C | 14 | U | 15 | G | 16 | C | 17 | cWW | tHW |
| 3 | HL_1FJG_001 | 1FJG | 0.0000 | 0 | A | U | 12 | U | 13 | U | 14 | G | 15 | A | 16 | U | 17 | C | 18 | C | 19 | U | 20 | G | 21 | G | 22 | cWW | tHW |
| 4 | HL_2AW7_001 | 2AW7 | 0.1166 | 0 | A | U | 12 | U | 13 | U | 14 | G | 15 | A | 16 | U | 17 | C | 18 | A | 19 | U | 20 | G | 21 | G | 22 | cWW | tHW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUGAUCCUGC | 2 |
| UUUGAUCCUGG | 1 |
| UUUGAUCAUGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUGAUCCUG | 3 |
| UUGAUCAUG | 1 |
Release history
| Release | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|---|
| Date | 2013-03-04 | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_47784.1 | Only in the parent motif |
|---|---|---|---|
| HL_19261.1 Compare | HL_3U5F_001, HL_1FJG_001, HL_2XZM_001 | HL_2AW7_001 | HL_2JLT_001, HL_3T4B_003 |
| HL_27831.1 Compare | HL_2AW7_001 | HL_3U5F_001, HL_1FJG_001, HL_2XZM_001 |
Children motifs
| Child motif | Common motif instances | Only in HL_47784.1 | Only in the child motif |
|---|---|---|---|
| HL_47784.2 Compare | HL_2AW7_001, HL_1FJG_001, HL_3U5F_001 | HL_2XZM_001 | HL_4BPP_001 |
- Annotations
-
- (4)
- Basepair signature
- cWW-R-tHW-R-R-R-R-R-R
- Heat map statistics
- Min 0.12 | Avg 0.19 | Max 0.35
Coloring options: