Motif HL_19261.1 Version HL_19261.1 of this group appears in releases 0.3 to 0.8
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-8 | 2-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3T4B_003 | 3T4B | 0.8445 | 0 | A | HCV IRES pseudoknot domain plus crystallization module | C | 304 | U | 305 | U | 306 | G | 307 | C | 308 | G | 309 | A | 310 | G | 311 | U | 312 | G | 313 | cWW | ncWw | |
| 2 | HL_2JLT_001 | 2JLT | 0.7479 | 0 | A | R06 | G | 5 | G | 6 | U | 7 | C | 8 | C | 9 | C | 10 | A | 11 | G | 12 | A | 13 | C | 14 | cWW | cWW | |
| 3 | HL_1FJG_001 | 1FJG | 0.2775 | 1 | A | SSU rRNA | U | 12 | U | 13 | G | 15 | A | 16 | U | 17 | C | 18 | C | 19 | U | 20 | G | 21 | G | 22 | cWW | tHW | |
| 4 | HL_3U5F_001 | 3U5F | 0.0000 | 1 | 6 | 18S rRNA | G | 7 | U | 8 | G | 10 | A | 11 | U | 12 | C | 13 | C | 14 | U | 15 | G | 16 | C | 17 | cWW | tHW | |
| 5 | HL_2XZM_001 | 2XZM | 0.2446 | 1 | A | 18S RRNA | G | 7 | U | 8 | G | 10 | A | 11 | U | 12 | C | 13 | C | 14 | U | 15 | G | 16 | C | 17 | cWW | ntWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUGAUCCUGC | 2 |
| CUUGCGAGUG | 1 |
| GGUCCCAGAC | 1 |
| UUUGAUCCUGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUGAUCCUG | 3 |
| UUGCGAGU | 1 |
| GUCCCAGA | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 |
|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_19261.1 | Only in the parent motif |
|---|---|---|---|
| HL_22654.1 Compare | HL_1FJG_001, HL_2XZM_001 | HL_2JLT_001, HL_3U5F_001, HL_3T4B_003 | HL_2AW7_001, HL_3O30_001 |
| HL_62044.1 Compare | HL_2JLT_001 | HL_3U5F_001, HL_1FJG_001, HL_2XZM_001, HL_3T4B_003 | HL_2ZNI_002, HL_3B31_001 |
Children motifs
| Child motif | Common motif instances | Only in HL_19261.1 | Only in the child motif |
|---|---|---|---|
| HL_47784.1 Compare | HL_3U5F_001, HL_1FJG_001, HL_2XZM_001 | HL_2JLT_001, HL_3T4B_003 | HL_2AW7_001 |
| HL_74686.1 Compare | HL_2JLT_001, HL_3T4B_003 | HL_3U5F_001, HL_1FJG_001, HL_2XZM_001 | HL_2A64_006 |
- Annotations
-
- (5)
- Basepair signature
- cWW-R-tHW-R-R-R-R-R
- Heat map statistics
- Min 0.24 | Avg 0.49 | Max 0.84
Coloring options: