Motif HL_48039.3 Version HL_48039.3 of this group appears in releases 1.16 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3U5F_012 | 3U5F | 0.4689 | 3 | 6 | 18S rRNA | U | 450 | A | 451 | U | 453 | A | 456 | cWW |
| 2 | HL_4BPP_012 | 4BPP | 0.3161 | 3 | A | 18S RRNA | U | 442 | A | 443 | U | 445 | A | 448 | cWW |
| 3 | HL_7MSF_001 | 7MSF | 0.2047 | 2 | R | RNA (14-mer) | C | 5||||P_1 | A | 6||||P_1 | C | 8||||P_1 | G | 10||||P_1 | cWW |
| 4 | HL_1ZDJ_001 | 1ZDJ | 0.1459 | 2 | R | RNA (8-mer) | G | 8||||P_1 | A | 9||||P_1 | C | 11||||P_1 | C | 13||||P_1 | cWW |
| 5 | HL_5MSF_001 | 5MSF | 0.0901 | 2 | R | RNA (18-mer) | G | 7||||P_1 | A | 8||||P_1 | C | 10||||P_1 | C | 12||||P_1 | cWW |
| 6 | HL_1U1Y_001 | 1U1Y | 0.0931 | 2 | R | RNA (17-mer) | G | 7||||P_1 | A | 8||||P_1 | C | 10||||P_1 | C | 12||||P_1 | cWW |
| 7 | HL_2IZM_001 | 2IZM | 0.0000 | 2 | R | RNA (19-mer) | G | 8||||P_1 | A | 9||||P_1 | C | 11||||P_1 | C | 13||||P_1 | cWW |
| 8 | HL_2BQ5_001 | 2BQ5 | 0.0898 | 2 | R | RNA (19-mer) | G | 8||||P_1 | A | 9||||P_1 | U | 11||||P_1 | C | 13||||P_1 | cWW |
| 9 | HL_2IZN_001 | 2IZN | 0.0910 | 2 | R | RNA (19-mer) | G | 8||||P_1 | A | 9||||P_1 | U | 11||||P_1 | C | 13||||P_1 | cWW |
| 10 | HL_2C50_001 | 2C50 | 0.1084 | 2 | R | RNA (19-mer) | G | 8||||P_1 | A | 9||||P_1 | A | 11||||P_1 | C | 13||||P_1 | cWW |
| 11 | HL_1VWW_052 | 1VWW | 0.4590 | 9 | 5 | 28S ribosomal RNA | C | 3948 | A | 3949 | U | 3950 | G | 4065 | cWW |
| 12 | HL_4A1B_053 | 4A1B | 0.6485 | 0 | 1 | 26S RRNA | U | 2558 | U | 2559 | U | 2560 | A | 2561 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUCAC | 4 |
| UAAUUCA | 2 |
| GAUUAC | 2 |
| CAACAG | 1 |
| GAUAAC | 1 |
| UCAAACGGUAACG | 1 |
| UUUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUCA | 4 |
| AAUUC | 2 |
| AUUA | 2 |
| AACA | 1 |
| AUAA | 1 |
| CAAACGGUAAC | 1 |
| UU | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in HL_48039.3 | Only in the parent motif |
|---|---|---|---|
| HL_48039.2 Compare | HL_2IZM_001, HL_3U5F_012, HL_4BPP_012, HL_2C50_001, HL_4A1B_053, HL_5MSF_001, HL_1U1Y_001, HL_2BQ5_001, HL_1ZDJ_001, HL_2IZN_001, HL_7MSF_001 | HL_1VWW_052 |
Children motifs
| Child motif | Common motif instances | Only in HL_48039.3 | Only in the child motif |
|---|---|---|---|
| HL_48039.4 Compare | HL_2IZM_001, HL_3U5F_012, HL_4BPP_012, HL_2C50_001, HL_4A1B_053, HL_5MSF_001, HL_1U1Y_001, HL_2BQ5_001, HL_1ZDJ_001, HL_2IZN_001, HL_7MSF_001 | HL_1VWW_052 | HL_4W21_052 |
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