Motif HL_48076.1 Version HL_48076.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_5E81_220 | 5E81 | 0.5411 | 0 | 3L | tRNA | A | 31 | C | 32 | U | 33 | U | 34 | U | 35 | U | 36 | A | 37 | A | 38 | U | 39 | cWW | |
2 | HL_5EL4_249 | 5EL4 | 0.0000 | 0 | 3L | tRNA | A | 31 | C | 32 | U | 33 | U | 34 | U | 35 | U | 36 | A | 37 | A | 38 | PSU | 39 | cWW | tSH |
3 | HL_8C3A_023 | 8C3A | 0.5952 | 2 | 1 | LSU rRNA | G | 1017 | U | 1018 | G | 1020 | A | 1021 | A | 1022 | A | 1023 | G | 1025 | A | 1026 | C | 1027 | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
ACUUUUAAU | 1 |
ACUUUUAA(PSU) | 1 |
GUUGAAAUGAC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
CUUUUAA | 2 |
UUGAAAUGA | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.54 | Avg 0.41 | Max 0.69
Coloring options: