#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 31-3
1 HL_5SWD_0055SWD0.12913Mini UNCGBPurine riboswitchU47C50A52cWW
2 HL_6LTU_0016LTU0.11502BRNA (56-mer)U12C15A16cWW
3 HL_8C3A_0408C3A0.15672Mini UNCG (H)1 LSU rRNAC1788U1791G1792cWW
4 HL_4V9F_0414V9F0.15242Mini UNCG0 LSU rRNAC1651U1654G1655cWW
5 HL_3SN2_0013SN20.08952Btransferrin receptor iron regulatory element B RNAC14U17G18cWW
6 HL_7D3J_0017D3J0.09242BRNA (43-MER)C12C15G16cWW
7 HL_7EU9_0017EU90.10472BRNA (43-MER)C12C15G16cWW
8 HL_3SNP_0023SNP0.00002Dferritin H IRE RNAC14U17G18cWW
9 HL_4KR9_0014KR90.36563Mini UNCGMRNA (39-MER)G10U13C15ncWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAGUG2
CAUCG2
UUUCUA1
UUUCA1
CCUUG1
CCAUG1
GUGUCC1
Non-Watson-Crick part of the motif
SequenceCounts
AGU2
AUC2
UUCU1
UUC1
CUU1
CAU1
UGUC1

Release history

Release3.803.813.823.833.84
Date2024-01-312024-02-282024-03-272024-04-242024-05-22
StatusNew id, 2 parentsExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (5)
  • Mini UNCG (3)
  • Mini UNCG (H) (1)
  • Basepair signature
    cWW-F
    Heat map statistics
    Min 0.07 | Avg 0.16 | Max 0.43
    Help

    Coloring options:

    HL_5SWD_005:HL_5SWD_005 = 0HL_5SWD_005:HL_6LTU_001 = 0.1283HL_5SWD_005:HL_8C3A_040 = 0.1727HL_5SWD_005:HL_4V9F_041 = 0.1772HL_5SWD_005:HL_3SN2_001 = 0.1148HL_5SWD_005:HL_7D3J_001 = 0.1294HL_5SWD_005:HL_7EU9_001 = 0.1507HL_5SWD_005:HL_3SNP_002 = 0.1291HL_5SWD_005:HL_4KR9_001 = 0.4183HL_6LTU_001:HL_5SWD_005 = 0.1283HL_6LTU_001:HL_6LTU_001 = 0HL_6LTU_001:HL_8C3A_040 = 0.074HL_6LTU_001:HL_4V9F_041 = 0.1028HL_6LTU_001:HL_3SN2_001 = 0.0819HL_6LTU_001:HL_7D3J_001 = 0.075HL_6LTU_001:HL_7EU9_001 = 0.1279HL_6LTU_001:HL_3SNP_002 = 0.115HL_6LTU_001:HL_4KR9_001 = 0.3948HL_8C3A_040:HL_5SWD_005 = 0.1727HL_8C3A_040:HL_6LTU_001 = 0.074HL_8C3A_040:HL_8C3A_040 = 0HL_8C3A_040:HL_4V9F_041 = 0.096HL_8C3A_040:HL_3SN2_001 = 0.1116HL_8C3A_040:HL_7D3J_001 = 0.1124HL_8C3A_040:HL_7EU9_001 = 0.1559HL_8C3A_040:HL_3SNP_002 = 0.1567HL_8C3A_040:HL_4KR9_001 = 0.4298HL_4V9F_041:HL_5SWD_005 = 0.1772HL_4V9F_041:HL_6LTU_001 = 0.1028HL_4V9F_041:HL_8C3A_040 = 0.096HL_4V9F_041:HL_4V9F_041 = 0HL_4V9F_041:HL_3SN2_001 = 0.0985HL_4V9F_041:HL_7D3J_001 = 0.104HL_4V9F_041:HL_7EU9_001 = 0.1324HL_4V9F_041:HL_3SNP_002 = 0.1524HL_4V9F_041:HL_4KR9_001 = 0.3995HL_3SN2_001:HL_5SWD_005 = 0.1148HL_3SN2_001:HL_6LTU_001 = 0.0819HL_3SN2_001:HL_8C3A_040 = 0.1116HL_3SN2_001:HL_4V9F_041 = 0.0985HL_3SN2_001:HL_3SN2_001 = 0HL_3SN2_001:HL_7D3J_001 = 0.0762HL_3SN2_001:HL_7EU9_001 = 0.102HL_3SN2_001:HL_3SNP_002 = 0.0895HL_3SN2_001:HL_4KR9_001 = 0.3809HL_7D3J_001:HL_5SWD_005 = 0.1294HL_7D3J_001:HL_6LTU_001 = 0.075HL_7D3J_001:HL_8C3A_040 = 0.1124HL_7D3J_001:HL_4V9F_041 = 0.104HL_7D3J_001:HL_3SN2_001 = 0.0762HL_7D3J_001:HL_7D3J_001 = 0HL_7D3J_001:HL_7EU9_001 = 0.0677HL_7D3J_001:HL_3SNP_002 = 0.0924HL_7D3J_001:HL_4KR9_001 = 0.3991HL_7EU9_001:HL_5SWD_005 = 0.1507HL_7EU9_001:HL_6LTU_001 = 0.1279HL_7EU9_001:HL_8C3A_040 = 0.1559HL_7EU9_001:HL_4V9F_041 = 0.1324HL_7EU9_001:HL_3SN2_001 = 0.102HL_7EU9_001:HL_7D3J_001 = 0.0677HL_7EU9_001:HL_7EU9_001 = 0HL_7EU9_001:HL_3SNP_002 = 0.1047HL_7EU9_001:HL_4KR9_001 = 0.391HL_3SNP_002:HL_5SWD_005 = 0.1291HL_3SNP_002:HL_6LTU_001 = 0.115HL_3SNP_002:HL_8C3A_040 = 0.1567HL_3SNP_002:HL_4V9F_041 = 0.1524HL_3SNP_002:HL_3SN2_001 = 0.0895HL_3SNP_002:HL_7D3J_001 = 0.0924HL_3SNP_002:HL_7EU9_001 = 0.1047HL_3SNP_002:HL_3SNP_002 = 0HL_3SNP_002:HL_4KR9_001 = 0.3656HL_4KR9_001:HL_5SWD_005 = 0.4183HL_4KR9_001:HL_6LTU_001 = 0.3948HL_4KR9_001:HL_8C3A_040 = 0.4298HL_4KR9_001:HL_4V9F_041 = 0.3995HL_4KR9_001:HL_3SN2_001 = 0.3809HL_4KR9_001:HL_7D3J_001 = 0.3991HL_4KR9_001:HL_7EU9_001 = 0.391HL_4KR9_001:HL_3SNP_002 = 0.3656HL_4KR9_001:HL_4KR9_001 = 0HL_5SWD_005HL_6LTU_001HL_8C3A_040HL_4V9F_041HL_3SN2_001HL_7D3J_001HL_7EU9_001HL_3SNP_002HL_4KR9_001Discrepancy0.000.100.200.300.40
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