Motif HL_49678.1 Version HL_49678.1 of this group appears in releases 3.80 to 3.84
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5SWD_005 | 5SWD | 0.1291 | 3 | B | Purine riboswitch | U | 47 | C | 50 | A | 52 | cWW | |
| 2 | HL_6LTU_001 | 6LTU | 0.1150 | 2 | B | RNA (56-mer) | U | 12 | C | 15 | A | 16 | cWW | |
| 3 | HL_8C3A_040 | 8C3A | 0.1567 | 2 | 1 | LSU rRNA | C | 1788 | U | 1791 | G | 1792 | cWW | |
| 4 | HL_4V9F_041 | 4V9F | 0.1524 | 2 | 0 | LSU rRNA | C | 1651 | U | 1654 | G | 1655 | cWW | |
| 5 | HL_3SN2_001 | 3SN2 | 0.0895 | 2 | B | transferrin receptor iron regulatory element B RNA | C | 14 | U | 17 | G | 18 | cWW | |
| 6 | HL_7D3J_001 | 7D3J | 0.0924 | 2 | B | RNA (43-MER) | C | 12 | C | 15 | G | 16 | cWW | |
| 7 | HL_7EU9_001 | 7EU9 | 0.1047 | 2 | B | RNA (43-MER) | C | 12 | C | 15 | G | 16 | cWW | |
| 8 | HL_3SNP_002 | 3SNP | 0.0000 | 2 | D | ferritin H IRE RNA | C | 14 | U | 17 | G | 18 | cWW | |
| 9 | HL_4KR9_001 | 4KR9 | 0.3656 | 3 | M | RNA (39-MER) | G | 10 | U | 13 | C | 15 | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGUG | 2 |
| CAUCG | 2 |
| UUUCUA | 1 |
| UUUCA | 1 |
| CCUUG | 1 |
| CCAUG | 1 |
| GUGUCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGU | 2 |
| AUC | 2 |
| UUCU | 1 |
| UUC | 1 |
| CUU | 1 |
| CAU | 1 |
| UGUC | 1 |
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