Motif HL_50142.1 Version HL_50142.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7A0S_004 | 7A0S | 0.6408 | 0 | X | LSU rRNA | C | 133 | G | 134 | U | 135 | A | 136 | A | 137 | G | 138 | cWW | |
| 2 | HL_5TBW_074 | 5TBW | 0.6145 | 0 | Other HL | 4 | 5.8S rRNA | U | 73 | U | 74 | G | 75 | C | 76 | A | 77 | G | 78 | ncWW |
| 3 | HL_4V88_194 | 4V88 | 0.4146 | 0 | A6 | SSU rRNA | U | 368 | A | 369 | A | 370 | G | 371 | G | 372 | G | 373 | cWW | |
| 4 | HL_5VSU_001 | 5VSU | 0.0000 | 0 | I | U6 snRNA | U | 70 | G | 71 | C | 72 | A | 73 | U | 74 | A | 75 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUAAG | 1 |
| UUGCAG | 1 |
| UAAGGG | 1 |
| UGCAUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAA | 1 |
| UGCA | 1 |
| AAGG | 1 |
| GCAU | 1 |
- Annotations
-
- Other HL (1)
- Basepair signature
- cWW-F-F-F-F
- Heat map statistics
- Min 0.34 | Avg 0.39 | Max 0.64
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