Motif HL_50622.2 Version HL_50622.2 of this group appears in releases 3.8 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-9 | 4-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6GSK_218 | 6GSK | 0.5690 | 0 | 3L | tRNA | C | 30 | C | 31 | U | 32 | U | 33 | G | 34 | G | 35 | U | 36 | A | 37 | A | 38 | G | 39 | G | 40 | cWW | ncSW | ntSH | ||
| 2 | HL_4WSM_225 | 4WSM | 0.4341 | 0 | 3L | tRNA | C | 31 | C | 32 | U | 33 | U | 34 | G | 35 | A | 36 | G | 37 | G | 38 | U | 39 | G | 40 | G | 41 | cWW | cSW | |||
| 3 | HL_4UYK_001 | 4UYK | 0.4581 | 0 | R | SRP RNA | G | 21 | G | 22 | U | 23 | U | 24 | C | 25 | G | 26 | G | 27 | C | 28 | G | 29 | U | 30 | C | 31 | cWW | ||||
| 4 | HL_1Y0Q_008 | 1Y0Q | 0.0000 | 0 | A | Group I catalytic intron | G | 224 | A | 225 | G | 226 | U | 227 | A | 228 | A | 229 | C | 230 | G | 231 | A | 232 | A | 233 | C | 234 | cWW | ncwW | ntSHa | ||
| 5 | HL_4V5O_049 | 4V5O | 0.2815 | 0 | BA | SSU rRNA | G | 514 | U | 515 | G | 516 | U | 517 | A | 518 | A | 519 | A | 520 | U | 521 | C | 522 | U | 523 | C | 524 | cWW | ncwW | |||
| 6 | HL_4V7M_039 | 4V7M | 0.5925 | 0 | AY | tRNA | G | 29 | A | 30 | U | 31 | U | 32 | G | 33 | U | 34 | G | 35 | A | 36 | U | 37 | U | 38 | C | 39 | ncWW | ncWH | ncwW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUUGGUAAGG | 1 |
| CCUUGAGGUGG | 1 |
| GGUUCGGCGUC | 1 |
| GAGUAACGAAC | 1 |
| GUGUAAAUCUC | 1 |
| GAUUGUGAUUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUUGGUAAG | 1 |
| CUUGAGGUG | 1 |
| GUUCGGCGU | 1 |
| AGUAACGAA | 1 |
| UGUAAAUCU | 1 |
| AUUGUGAUU | 1 |
- Annotations
- Basepair signature
- cWW-R-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.28 | Avg 0.46 | Max 0.78
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