Motif HL_52890.1 Version HL_52890.1 of this group appears in releases 0.1 to 0.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3EPH_004 | 3EPH | 0.0000 | 4 | F | tRNA | C | 13 | A | 14 | G | 15 | A | 21 | G | 22 | cWW | ||
| 2 | HL_2ZM5_001 | 2ZM5 | 0.1822 | 5 | tRNA D-loop (H) | C | tRNA | C | 13 | A | 14 | G | 15 | A | 21 | G | 22 | cWW | ncWS |
| 3 | HL_3EPH_001 | 3EPH | 0.1828 | 4 | tRNA D-loop | E | tRNA | C | 13 | A | 14 | G | 15 | A | 21 | G | 22 | cWW | cWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGUGGUAG | 2 |
| CAGUCGGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGUGGUA | 2 |
| AGUCGGUA | 1 |
Release history
| Release | 0.1 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_52890.1 | Only in the child motif |
|---|---|---|---|
| HL_52890.2 Compare | HL_3EPH_001, HL_2ZM5_001 | HL_3EPH_004 | HL_1J1U_001 |
| HL_22719.1 Compare | HL_3EPH_004 | HL_3EPH_001, HL_2ZM5_001 |
- Annotations
-
- tRNA D-loop (H) (1)
- tRNA D-loop (1)
- (1)
- Basepair signature
- Heat map statistics
- Min 0.14 | Avg 0.11 | Max 0.18
Coloring options: