Motif HL_52890.2 Version HL_52890.2 of this group appears in releases 0.2 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1J1U_001 | 1J1U | 0.0000 | 5 | tRNA D-loop | B | C | 513 | A | 514 | G | 515 | C | 516 | A | 522 | G | 523 | cWW | ncWS |
| 2 | HL_2ZM5_001 | 2ZM5 | 0.6280 | 4 | tRNA D-loop (H) | C | C | 13 | A | 14 | G | 15 | U | 16 | A | 21 | G | 22 | cWW | ncWS |
| 3 | HL_3EPH_001 | 3EPH | 0.6571 | 3 | tRNA D-loop | E | C | 13 | A | 14 | G | 15 | U | 16 | A | 21 | G | 22 | cWW | cWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGCCUGGUAG | 1 |
| CAGUCGGUAG | 1 |
| CAGUGGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGCCUGGUA | 1 |
| AGUCGGUA | 1 |
| AGUGGUA | 1 |
Release history
| Release | 0.2 |
|---|---|
| Date | 2011-12-08 |
| Status | Updated, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in HL_52890.2 | Only in the parent motif |
|---|---|---|---|
| HL_52890.1 Compare | HL_3EPH_001, HL_2ZM5_001 | HL_1J1U_001 | HL_3EPH_004 |
| HL_54566.1 Compare | HL_1J1U_001 | HL_3EPH_001, HL_2ZM5_001 |
Children motifs
| Child motif | Common motif instances | Only in HL_52890.2 | Only in the child motif |
|---|---|---|---|
| HL_72273.1 Compare | HL_3EPH_001, HL_2ZM5_001 | HL_1J1U_001 | HL_3AMU_001, HL_3TUP_001, HL_1GAX_004 |
| HL_98833.1 Compare | HL_1J1U_001 | HL_3EPH_001, HL_2ZM5_001 | HL_2ZUF_001, HL_1H4S_001 |
- Annotations
-
- tRNA D-loop (2)
- tRNA D-loop (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.23 | Avg 0.34 | Max 0.66
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