Motif HL_53845.1 Version HL_53845.1 of this group appears in releases 3.80 to 3.84
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7KGA_004 | 7KGA | 0.2629 | 8 | B | Flavivirus DB element | U | 53 | A | 54 | A | 63 | G | 64 | cWW | tSH | |
| 2 | HL_7KGA_002 | 7KGA | 0.0000 | 8 | A | Flavivirus DB element | U | 53 | A | 54 | A | 63 | G | 64 | cWW | tSH | |
| 3 | HL_2CZJ_007 | 2CZJ | 0.5513 | 2 | Other HL | H | tmRNA (63-MER) | G | 25 | U | 26 | G | 29 | C | 30 | cWW | |
| 4 | HL_1M5K_003 | 1M5K | 0.8234 | 2 | GNRA | B | RNA HAIRPIN RIBOZYME | G | 74 | G | 75 | A | 78 | C | 79 | cWW | ntSH |
| 5 | HL_6CZR_074 | 6CZR | 0.8701 | 2 | GNRA | 1a | SSU rRNA | G | 153 | G | 154 | A | 157 | C | 158 | ncWW | ntSH |
| 6 | HL_4V88_200 | 4V88 | 0.9814 | 2 | Other HL | A6 | SSU rRNA | C | 569 | A | 570 | C | 573 | G | 574 | cWW | |
| 7 | HL_8C3A_206 | 8C3A | 0.9632 | 2 | CM | SSU rRNA | C | 567 | A | 568 | C | 571 | G | 572 | cWW | ||
| 8 | HL_6N5P_002 | 6N5P | 0.6375 | 3 | A | cyclic di-AMP riboswitch | G | 58 | U | 59 | G | 63 | C | 64 | ncWW | ||
| 9 | HL_7A0S_046 | 7A0S | 0.9399 | 3 | X | LSU rRNA | C | 1797 | G | 1798 | A | 1802 | G | 1803 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAUCGGUUAGAG | 2 |
| GGAAAC | 2 |
| CAGCCG | 2 |
| GUUCGC | 1 |
| GUGAAGC | 1 |
| CGAACAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUCGGUUAGA | 2 |
| GAAA | 2 |
| AGCC | 2 |
| UUCG | 1 |
| UGAAG | 1 |
| GAACA | 1 |
- Annotations
-
- GNRA (2)
- Other HL (2)
- Basepair signature
- cWW-tSH
- Heat map statistics
- Min 0.08 | Avg 0.52 | Max 0.98
Coloring options: