Motif HL_53987.1 Version HL_53987.1 of this group appears in releases 3.12 to 3.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V88_190 | 4V88 | 0.9509 | 2 | A6 | SSU rRNA | C | 230 | U | 231 | G | 234 | G | 235 | ncWW | ||
| 2 | HL_4M6D_004 | 4M6D | 0.0000 | 1 | D-loop related | H | aptamer | C | 32 | U | 33 | A | 35 | G | 36 | cWW | cWS |
| 3 | HL_4M4O_001 | 4M4O | 0.0985 | 1 | D-loop related | B | RNA (59-MER) | C | 32 | U | 33 | A | 35 | G | 36 | cWW | cWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUAG | 2 |
| CUUCGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUA | 2 |
| UUCG | 1 |
- Annotations
-
- D-loop related (2)
- (1)
- Basepair signature
- cWW-cWS
- Heat map statistics
- Min 0.10 | Avg 0.45 | Max 0.99
Coloring options: