Motif HL_54401.1 Version HL_54401.1 of this group appears in releases 0.1 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 5-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1KOG_006 | 1KOG | 0.4125 | 2 | N | U | 82 | U | 83 | U | 84 | C | 85 | G | 86 | U | 87 | G | 90 | cWW | cSH |
| 2 | HL_1KOG_002 | 1KOG | 0.0378 | 2 | J | U | 82 | U | 83 | U | 84 | C | 85 | G | 86 | U | 87 | G | 90 | cWW | cSH |
| 3 | HL_1KOG_008 | 1KOG | 0.0410 | 2 | P | U | 82 | U | 83 | U | 84 | C | 85 | G | 86 | U | 87 | G | 90 | cWW | cSH |
| 4 | HL_1KOG_004 | 1KOG | 0.0324 | 2 | L | U | 82 | U | 83 | U | 84 | C | 85 | G | 86 | U | 87 | G | 90 | cWW | cSH |
| 5 | HL_1KOG_005 | 1KOG | 0.0311 | 2 | M | U | 82 | U | 83 | U | 84 | C | 85 | G | 86 | U | 87 | G | 90 | cWW | cSH |
| 6 | HL_1KOG_001 | 1KOG | 0.0270 | 2 | I | U | 82 | U | 83 | U | 84 | C | 85 | G | 86 | U | 87 | G | 90 | cWW | cSH |
| 7 | HL_1KOG_003 | 1KOG | 0.0246 | 2 | K | U | 82 | U | 83 | U | 84 | C | 85 | G | 86 | U | 87 | G | 90 | cWW | |
| 8 | HL_1KOG_007 | 1KOG | 0.0000 | 2 | O | U | 82 | U | 83 | U | 84 | C | 85 | G | 86 | U | 87 | G | 90 | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUCGUGUG | 8 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUCGUGU | 8 |
Release history
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_54401.1 | Only in the child motif |
|---|---|---|---|
| HL_56775.1 Compare | HL_1KOG_002 | HL_1KOG_008, HL_1KOG_003, HL_1KOG_001, HL_1KOG_007, HL_1KOG_006, HL_1KOG_005, HL_1KOG_004 |
Coloring options: