Motif HL_56775.1 Version HL_56775.1 of this group appears in releases 0.3 to 1.18

Download

Csv

Json

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7	1-7	5-6
1	HL_1KOG_002	1KOG	0	2	J	Threonyl-tRNA synthetase mRNA	U	82	U	83	U	84	C	85	G	86	U	87	G	90	cWW	cSH

3D structures

Complete motif including flanking bases

Sequence	Counts
UUUCGUGUG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UUCGUGU	1

Release history

Release	0.3	0.4	0.5	0.6	0.7	0.8	1.0	1.1	1.2	1.3	1.4	1.5	1.6	1.7	1.8	1.9	1.10	1.11	1.12	1.13	1.14	1.15	1.16	1.17	1.18
Date	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-03-04	2013-04-06	2013-05-04	2013-06-01	2013-07-03	2013-08-03	2013-08-31	2013-09-28	2013-11-04	2013-12-07	2014-01-04	2014-02-01	2014-03-01	2014-03-29	2014-04-27	2014-06-15	2014-07-26	2014-09-06	2014-10-09
Status	New id, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

Parent motif	Common motif instances	Only in HL_56775.1	Only in the parent motif
HL_54401.1 Compare	HL_1KOG_002		HL_1KOG_008, HL_1KOG_003, HL_1KOG_001, HL_1KOG_007, HL_1KOG_006, HL_1KOG_005, HL_1KOG_004

Children motifs

This motif has no children motifs.

Annotations: (1)
Basepair signature: cWW-cSH-R-R
Heat map statistics: Min 0.00 | Avg 0.00 | Max 0.00

Help

Coloring options: Nucleotide numbers

Copyright 2025 BGSU RNA group. Page generated in 0.3387 s