Motif HL_54751.3 Version HL_54751.3 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-9 | 4-8 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1FJG_023 | 1FJG | 0.7868 | 1 | A | SSU rRNA | C | 1027 | C | 1028 | C | 1029 | C | 1030 | G | 1030|||A | G | 1030|||C | A | 1030|||D | G | 1031 | G | 1032 | G | 1033 | G | 1034 | cWW | ncWW | ||
| 2 | HL_4CUX_021 | 4CUX | 0.0000 | 1 | 2 | SSU rRNA | G | 899 | A | 900 | G | 901 | G | 902 | U | 903 | A | 905 | A | 906 | A | 907 | U | 908 | U | 909 | C | 910 | cWW | ncWW | tSH | |
| 3 | HL_3QSY_003 | 3QSY | 0.9024 | 2 | D | tRNA | C | 51 | G | 52 | G | 53 | U | 54 | U | 55 | A | 57 | A | 58 | U | 60 | C | 61 | C | 62 | G | 63 | cWW | ncWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCCCGCGAGGGG | 1 |
| GAGGUGAAAUUC | 1 |
| CGGUUCAAAUCCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CCCGCGAGGG | 1 |
| AGGUGAAAUU | 1 |
| GGUUCAAAUCC | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-15 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_54751.3 | Only in the parent motif |
|---|---|---|---|
| HL_54751.2 Compare | HL_1FJG_023, HL_3QSY_003 | HL_4CUX_021 |
Children motifs
| Child motif | Common motif instances | Only in HL_54751.3 | Only in the child motif |
|---|---|---|---|
| HL_72372.1 Compare | HL_1FJG_023, HL_4CUX_021 | HL_3QSY_003 | HL_1VWW_036, HL_1VX2_031, HL_1VWW_038 |
| HL_72489.1 Compare | HL_3QSY_003 | HL_1FJG_023, HL_4CUX_021 | HL_1VWW_025 |
- Annotations
-
- (3)
- Basepair signature
- cWW-cWW-R-R-R-R-R-R
- Heat map statistics
- Min 0.79 | Avg 0.60 | Max 0.99
Coloring options: