Motif HL_72372.1 Version HL_72372.1 of this group appears in releases 1.16 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-10 | 2-11 | 3-10 | 4-9 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1VX2_031 | 1VX2 | 0.6909 | 1 | 2 | 18S ribosomal RNA | G | 1656 | G | 1657 | G | 1658 | U | 1659 | C | 1660 | A | 1661 | U | 1662 | A | 1663 | A | 1664 | C | 1666 | U | 1667 | U | 1668 | cWW | ncWW | |||
| 2 | HL_4CUX_021 | 4CUX | 0.6966 | 0 | 2 | 18S RRNA | G | 899 | A | 900 | G | 901 | G | 902 | U | 903 | G | 904 | A | 905 | A | 906 | A | 907 | U | 908 | U | 909 | C | 910 | cWW | ncWW | tSH | ||
| 3 | HL_1VWW_036 | 1VWW | 0.0000 | -5 | 5 | 28S ribosomal RNA | C | 2558 | G | 2559 | C | 2560 | C | 2561 | G | 2562 | C | 2563 | G | 2564 | A | 2565 | G | 2566 | G | 2567 | C | 2568 | G | 2569 | cWW | ncWw | |||
| 4 | HL_1FJG_023 | 1FJG | 0.4045 | 0 | A | SSU rRNA | C | 1027 | C | 1028 | C | 1029 | C | 1030 | G | 1030|||A | C | 1030|||B | G | 1030|||C | A | 1030|||D | G | 1031 | G | 1032 | G | 1033 | G | 1034 | cWW | ncWW | |||
| 5 | HL_1VWW_038 | 1VWW | 0.7835 | -5 | 5 | 28S ribosomal RNA | G | 2622 | A | 2623 | G | 2624 | U | 2625 | U | 2626 | C | 2627 | U | 2628 | C | 2629 | U | 2630 | U | 2632 | U | 2633 | C | 2634 | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGUCAUAAGCUU | 1 |
| GAGGUGAAAUUC | 1 |
| GUUCGCC | 1 |
| CCCCGCGAGGGG | 1 |
| UGAACAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGUCAUAAGCU | 1 |
| AGGUGAAAUU | 1 |
| UUCGC | 1 |
| CCCGCGAGGG | 1 |
| GAACA | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in HL_72372.1 | Only in the parent motif |
|---|---|---|---|
| HL_54751.3 Compare | HL_1FJG_023, HL_4CUX_021 | HL_1VWW_036, HL_1VX2_031, HL_1VWW_038 | HL_3QSY_003 |
Children motifs
| Child motif | Common motif instances | Only in HL_72372.1 | Only in the child motif |
|---|---|---|---|
| HL_80263.1 Compare | HL_1FJG_023, HL_4CUX_021 | HL_1VWW_036, HL_1VX2_031, HL_1VWW_038 | HL_4W23_019, HL_4W23_007, HL_4W21_036 |
- Annotations
-
- (5)
- Basepair signature
- cWW-R-R-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.40 | Avg 0.60 | Max 0.89
Coloring options: