Motif HL_56691.1 Version HL_56691.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4O26_001 | 4O26 | 0.9347 | 2 | E | Telomerase TR | C | 186 | C | 188 | G | 190 | cWW | |
| 2 | HL_6N5P_002 | 6N5P | 0.4495 | 4 | A | cyclic di-AMP riboswitch | G | 58 | U | 59 | C | 64 | ncWW | |
| 3 | HL_4YAZ_004 | 4YAZ | 0.0000 | 2 | Mini UNCG | R | Cyclic di-GMP-I riboswitch | C | 56 | C | 58 | G | 60 | cWW |
| 4 | HL_4LFB_005 | 4LFB | 0.2218 | 2 | Mini UNCG | A | SSU rRNA | C | 201 | U | 203 | G | 216 | cWW |
| 5 | HL_7A0S_029 | 7A0S | 0.3018 | 5 | X | LSU rRNA | C | 1103 | G | 1104 | G | 1110 | cWW | |
| 6 | HL_4V88_198 | 4V88 | 0.3621 | 3 | A6 | SSU rRNA | C | 491 | A | 492 | G | 496 | cWW | |
| 7 | HL_5TBW_039 | 5TBW | 0.4170 | 3 | GNRA related | 1 | LSU rRNA | A | 1760 | C | 1761 | U | 1765 |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUCGG | 1 |
| GUGAAGC | 1 |
| CCCUG | 1 |
| CUUUG | 1 |
| CGUAAUAG | 1 |
| CAUUCG | 1 |
| ACCUUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCG | 1 |
| UGAAG | 1 |
| CCU | 1 |
| UUU | 1 |
| GUAAUA | 1 |
| AUUC | 1 |
| CCUU | 1 |
- Annotations
-
- (4)
- Mini UNCG (2)
- GNRA related (1)
- Basepair signature
- cWW-F
- Heat map statistics
- Min 0.22 | Avg 0.49 | Max 0.96
Coloring options: