Motif HL_34954.1 Version HL_34954.1 of this group appears in releases 1.16 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-12 | 3-12 | 4-10 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1VX2_007 | 1VX2 | 0.9023 | 0 | 2 | SSU rRNA | A | 376 | G | 377 | U | 378 | C | 379 | G | 380 | C | 381 | C | 382 | G | 383 | U | 384 | G | 385 | C | 386 | C | 387 | U | 388 | ||||
| 2 | HL_1VX2_013 | 1VX2 | 0.2477 | 0 | 2 | SSU rRNA | A | 569 | C | 570 | U | 571 | U | 572 | U | 573 | A | 574 | A | 575 | A | 576 | U | 577 | C | 578 | C | 579 | U | 580 | U | 581 | ncWW | |||
| 3 | HL_3U5F_014 | 3U5F | 0.0000 | 0 | 6 | SSU rRNA | A | 520 | A | 521 | U | 522 | G | 523 | U | 524 | A | 525 | A | 526 | A | 527 | U | 528 | A | 529 | C | 530 | C | 531 | U | 532 | cWW | ncWWa | tSH | |
| 4 | HL_4CUX_014 | 4CUX | 0.1618 | 0 | 2 | SSU rRNA | A | 520 | A | 521 | U | 522 | G | 523 | U | 524 | A | 525 | A | 526 | A | 527 | U | 528 | A | 529 | C | 530 | C | 531 | U | 532 | cWW | ncSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAUGUAAAUACCU | 2 |
| AGUCGCCGUGCCU | 1 |
| ACUUUAAAUCCUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUGUAAAUACC | 2 |
| GUCGCCGUGCC | 1 |
| CUUUAAAUCCU | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in HL_34954.1 | Only in the parent motif |
|---|---|---|---|
| HL_34491.1 Compare | HL_4CUX_014 | HL_1VX2_007, HL_1VX2_013, HL_3U5F_014 | |
| HL_64803.1 Compare | HL_3U5F_014 | HL_4CUX_014, HL_1VX2_007, HL_1VX2_013 | HL_4CUX_013 |
Children motifs
| Child motif | Common motif instances | Only in HL_34954.1 | Only in the child motif |
|---|---|---|---|
| HL_57225.1 Compare | HL_4CUX_014, HL_3U5F_014 | HL_1VX2_007, HL_1VX2_013 | HL_4R0D_006 |
- Annotations
-
- (4)
- Basepair signature
- cWW-R-R-R-R-tSH-R-R-R-R
- Heat map statistics
- Min 0.16 | Avg 0.43 | Max 0.94
Coloring options: