Motif HL_57963.1 Version HL_57963.1 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4W21_023 | 4W21 | 0.6660 | 1 | 5 | LSU rRNA | C | 1763 | G | 1764 | A | 1765 | A | 1766 | A | 1767 | G | 1769 | cWW | ||
| 2 | HL_3P49_002 | 3P49 | 0.3201 | 1 | A | Glycine riboswitch | G | 41 | U | 42 | A | 43 | A | 44 | A | 45 | C | 47 | cWW | tWH | |
| 3 | HL_3Q1Q_002 | 3Q1Q | 0.0000 | 1 | B | RNase P class A | G | 77 | U | 78 | A | 79 | A | 80 | C | 81 | C | 83 | cWW | ||
| 4 | HL_1U9S_001 | 1U9S | 0.3543 | 1 | GNRA | A | RNase P class A | G | 84 | U | 85 | A | 86 | A | 87 | C | 88 | C | 90 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUAACGC | 2 |
| CGAAACG | 1 |
| GUAAAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAACG | 2 |
| GAAAC | 1 |
| UAAAU | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-09 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_57963.1 | Only in the parent motif |
|---|---|---|---|
| HL_00415.1 Compare | HL_3Q1Q_002, HL_3P49_002, HL_1U9S_001 | HL_4W21_023 | HL_1VX2_003, HL_1VWW_023 |
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- GNRA (1)
- Basepair signature
- cWW-R-R-R
- Heat map statistics
- Min 0.32 | Avg 0.41 | Max 0.73
Coloring options: