Motif HL_58034.1 Version HL_58034.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-6 | 3-4 | 3-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6UFM_006 | 6UFM | 0.5654 | 0 | Pseudoknot | B | RNA (98-MER) | G | 80 | G | 81 | U | 82 | G | 83 | A | 84 | G | 85 | C | 86 | C | 87 | cWW | ncSH | ||
| 2 | HL_6UFG_003 | 6UFG | 0.6161 | 0 | Pseudoknot | A | RNA (166-MER) | G | 69 | G | 70 | U | 71 | U | 72 | G | 73 | G | 74 | C | 75 | C | 76 | cWW | ncWH | ncSH | |
| 3 | HL_7D8O_001 | 7D8O | 0.4247 | 2 | Pseudoknot with intercalation | B | Antitoxin RNA | U | 4 | G | 5 | U | 8 | U | 9 | G | 10 | C | 11 | U | 12 | A | 13 | cWW | ncSH | ||
| 4 | HL_2XDB_001 | 2XDB | 0.3983 | 2 | Pseudoknot with intercalation | G | TOXI | U | 4 | G | 5 | U | 8 | U | 9 | G | 10 | C | 11 | U | 12 | A | 13 | cWW | ncSH | ||
| 5 | HL_2XD0_006 | 2XD0 | 0.4212 | 2 | Pseudoknot with intercalation | W | TOXI | U | 4 | G | 5 | U | 8 | U | 9 | G | 10 | C | 11 | U | 12 | A | 13 | cWW | ncSH | ||
| 6 | HL_4WF9_067 | 4WF9 | 0.1903 | 2 | Pseudoknot with intercalation | X | LSU rRNA | U | 59 | U | 60 | U | 63 | A | 64 | A | 65 | C | 66 | G | 67 | A | 68 | cWW | ncSH | ||
| 7 | HL_7A0S_001 | 7A0S | 0.0000 | 2 | Pseudoknot with intercalation | X | LSU rRNA | C | 58 | G | 59 | U | 62 | A | 63 | C | 64 | C | 65 | U | 66 | G | 67 | cWW | cSH | ||
| 8 | HL_4V9F_001 | 4V9F | 0.1696 | 2 | Pseudoknot with intercalation | 0 | LSU rRNA | U | 55 | G | 56 | A | 59 | A | 60 | G | 61 | C | 62 | U | 63 | G | 64 | cWW | cSH | ||
| 9 | HL_8VTW_001 | 8VTW | 0.2036 | 2 | Pseudoknot with intercalation | 1A | LSU rRNA | U | 59 | G | 60 | U | 63 | A | 64 | C | 65 | C | 66 | U | 67 | G | 68 | cWW | ncSH | ||
| 10 | HL_8C3A_229 | 8C3A | 0.3781 | 2 | Pseudoknot with intercalation | 4 | 5.8S rRNA | C | 47 | A | 48 | G | 51 | A | 52 | A | 53 | A | 54 | U | 55 | G | 56 | cWW | |||
| 11 | HL_5TBW_230 | 5TBW | 0.3882 | 2 | Pseudoknot with intercalation | 4 | 5.8S rRNA | C | 47 | A | 48 | G | 51 | A | 52 | A | 53 | A | 54 | U | 55 | G | 56 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAUUUGCUA | 3 |
| CAGCGAAAUG | 2 |
| GGUGAGCC | 1 |
| GGUUGGCC | 1 |
| UUACUAACGA | 1 |
| CGAUUACCUG | 1 |
| UGCCAAGCUG | 1 |
| UGGCUACCUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUUUGCU | 3 |
| AGCGAAAU | 2 |
| GUGAGC | 1 |
| GUUGGC | 1 |
| UACUAACG | 1 |
| GAUUACCU | 1 |
| GCCAAGCU | 1 |
| GGCUACCU | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Pseudoknot with intercalation (9)
- Pseudoknot (2)
- Basepair signature
- cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.07 | Avg 0.43 | Max 0.79
Coloring options: