Motif HL_58083.1 Version HL_58083.1 of this group appears in releases 0.1 to 0.1
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2QBG_009 | 2QBG | 0.0000 | 0 | B | 23S rRNA | C | 225 | A | 226 | A | 227 | C | 228 | C | 229 | G | 230 | cWW | tSH |
| 2 | HL_2DU3_001 | 2DU3 | 0.7630 | 5 | D | tRNA | A | 912 | G | 913 | A | 914 | G | 915 | U | 921 | U | 922 | cWW | ntSH |
| 3 | HL_1U0B_001 | 1U0B | 0.8536 | 5 | A | tRNA | A | 12 | A | 13 | A | 14 | G | 15 | A | 22 | U | 23 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAACCG | 1 |
| AGAGGGGCUUU | 1 |
| AAAGCGGUUAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AACC | 1 |
| GAGGGGCUU | 1 |
| AAGCGGUUA | 1 |
Release history
| Release | 0.1 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_58083.1 | Only in the child motif |
|---|---|---|---|
| HL_58083.2 Compare | HL_2DU3_001, HL_1U0B_001 | HL_2QBG_009 | HL_2DU6_001 |
| HL_41237.2 Compare | HL_2QBG_009 | HL_2DU3_001, HL_1U0B_001 | HL_1S72_006, HL_3O58_001, HL_3PYO_006, HL_2ZJR_006, HL_2QBG_008 |
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