Motif HL_41237.2 Version HL_41237.2 of this group appears in releases 0.2 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2QBG_009 | 2QBG | 0.7135 | 0 | B | LSU rRNA | C | 225 | A | 226 | A | 227 | C | 228 | C | 229 | G | 230 | cWW | tSH |
| 2 | HL_1S72_006 | 1S72 | 0.0000 | 2 | 0 | LSU rRNA | G | 164 | A | 165 | C | 168 | A | 169 | U | 170 | C | 171 | cWW | tSH |
| 3 | HL_3O58_001 | 3O58 | 0.0931 | 2 | 1 | LSU rRNA | U | 38 | A | 39 | C | 42 | A | 43 | U | 44 | A | 45 | cWW | ntSH |
| 4 | HL_2ZJR_006 | 2ZJR | 0.1180 | 2 | X | LSU rRNA | G | 171 | A | 172 | C | 175 | A | 176 | U | 177 | C | 178 | cWW | ntSH |
| 5 | HL_2QBG_008 | 2QBG | 0.2376 | 2 | B | LSU rRNA | G | 194 | A | 195 | C | 198 | A | 199 | U | 200 | C | 201 | cWW | ntSH |
| 6 | HL_3PYO_006 | 3PYO | 0.3040 | 2 | A | LSU rRNA | G | 194 | A | 195 | C | 198 | A | 199 | U | 200 | C | 201 | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAACAUC | 4 |
| CAACCG | 1 |
| UAAGCAUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAACAU | 4 |
| AACC | 1 |
| AAGCAU | 1 |
Release history
| Release | 0.2 |
|---|---|
| Date | 2011-12-08 |
| Status | Updated, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in HL_41237.2 | Only in the parent motif |
|---|---|---|---|
| HL_41237.1 Compare | HL_1S72_006, HL_3O58_001, HL_3PYO_006, HL_2ZJR_006, HL_2QBG_008 | HL_2QBG_009 | HL_3DIR_003 |
| HL_58083.1 Compare | HL_2QBG_009 | HL_1S72_006, HL_3O58_001, HL_3PYO_006, HL_2ZJR_006, HL_2QBG_008 | HL_2DU3_001, HL_1U0B_001 |
Children motifs
| Child motif | Common motif instances | Only in HL_41237.2 | Only in the child motif |
|---|---|---|---|
| HL_87844.1 Compare | HL_1S72_006, HL_2ZJR_006, HL_2QBG_008 | HL_3O58_001, HL_3PYO_006, HL_2QBG_009 | HL_3V2F_006, HL_4A1B_001, HL_2QBG_022, HL_3DIR_003, HL_3V2F_021, HL_3U5H_001 |
| HL_48116.1 Compare | HL_2QBG_009 | HL_1S72_006, HL_3O58_001, HL_3PYO_006, HL_2ZJR_006, HL_2QBG_008 | HL_2ZJR_016, HL_1Y0Q_006, HL_3DIR_004 |
Coloring options: