Motif HL_58311.1 Version HL_58311.1 of this group appears in releases 0.1 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 5-6 | 5-7 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2ZJR_001 | 2ZJR | 0.0000 | 0 | Pseudoknot with intercalation (H) | X | LSU rRNA | C | 58 | G | 59 | A | 60 | U | 61 | U | 62 | A | 63 | C | 64 | C | 65 | U | 66 | G | 67 | cWW | ncSH | cSH |
| 2 | HL_3PYO_001 | 3PYO | 0.2308 | 0 | A | 23S ribosomal RNA | U | 59 | G | 60 | G | 61 | C | 62 | U | 63 | A | 64 | C | 65 | C | 66 | U | 67 | G | 68 | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAUUACCUG | 1 |
| UGGCUACCUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUUACCU | 1 |
| GGCUACCU | 1 |
Release history
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_58311.1 | Only in the child motif |
|---|---|---|---|
| HL_11509.1 Compare | HL_2ZJR_001 | HL_3PYO_001 | HL_4A1C_001, HL_2XD0_001, HL_1S72_001, HL_2QBG_003, HL_3V2F_001 |
- Annotations
-
- Pseudoknot with intercalation (H) (1)
- (1)
- Basepair signature
- Heat map statistics
- Min 0.23 | Avg 0.12 | Max 0.23
Coloring options: