Motif HL_11509.1 Version HL_11509.1 of this group appears in releases 0.3 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 5-6 | 5-7 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2QBG_003 | 2QBG | 0.3811 | 0 | B | 23S rRNA | U | 59 | G | 60 | C | 61 | U | 62 | A | 63 | A | 64 | U | 65 | C | 66 | U | 67 | G | 68 | cWW | ncSH | ||
| 2 | HL_2ZJR_001 | 2ZJR | 0.2259 | 0 | Pseudoknot with intercalation (H) | X | LSU rRNA | C | 58 | G | 59 | A | 60 | U | 61 | U | 62 | A | 63 | C | 64 | C | 65 | U | 66 | G | 67 | cWW | ncSH | cSH |
| 3 | HL_1S72_001 | 1S72 | 0.0000 | 0 | Pseudoknot with intercalation (H) | 0 | LSU rRNA | U | 55 | G | 56 | C | 57 | C | 58 | A | 59 | A | 60 | G | 61 | C | 62 | U | 63 | G | 64 | cWW | ncSH | |
| 4 | HL_3V2F_001 | 3V2F | 0.2432 | 0 | A | 23S Ribosomal RNA | U | 59 | G | 60 | G | 61 | C | 62 | U | 63 | A | 64 | C | 65 | C | 66 | U | 67 | G | 68 | cWW | cSH | ||
| 5 | HL_4A1C_001 | 4A1C | 0.2723 | 0 | 2 | 5.8S RRNA | C | 50 | A | 51 | G | 52 | C | 53 | G | 54 | A | 55 | A | 56 | A | 57 | U | 58 | G | 59 | cWW | |||
| 6 | HL_2XD0_001 | 2XD0 | 0.7913 | 0 | V | TOXI | U | 4 | G | 5 | A | 6 | U | 7 | U | 8 | U | 9 | G | 10 | C | 11 | U | 12 | A | 13 | ncWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGCUAAUCUG | 1 |
| CGAUUACCUG | 1 |
| UGCCAAGCUG | 1 |
| UGGCUACCUG | 1 |
| CAGCGAAAUG | 1 |
| UGAUUUGCUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCUAAUCU | 1 |
| GAUUACCU | 1 |
| GCCAAGCU | 1 |
| GGCUACCU | 1 |
| AGCGAAAU | 1 |
| GAUUUGCU | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 |
|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_11509.1 | Only in the parent motif |
|---|---|---|---|
| HL_04325.1 Compare | HL_2XD0_001, HL_2QBG_003 | HL_2ZJR_001, HL_4A1C_001, HL_1S72_001, HL_3V2F_001 | HL_3O58_075 |
| HL_58311.1 Compare | HL_2ZJR_001 | HL_4A1C_001, HL_2XD0_001, HL_1S72_001, HL_2QBG_003, HL_3V2F_001 | HL_3PYO_001 |
| HL_51930.1 Compare | HL_1S72_001 | HL_2ZJR_001, HL_4A1C_001, HL_2XD0_001, HL_2QBG_003, HL_3V2F_001 |
Children motifs
| Child motif | Common motif instances | Only in HL_11509.1 | Only in the child motif |
|---|---|---|---|
| HL_11509.2 Compare | HL_4A1C_001, HL_2XD0_001, HL_1S72_001, HL_2QBG_003, HL_3V2F_001 | HL_2ZJR_001 | HL_4IOA_001 |
- Annotations
-
- (4)
- Pseudoknot with intercalation (H) (2)
- Basepair signature
- cWW-R-R-cSH-cSH-R-R
- Heat map statistics
- Min 0.23 | Avg 0.41 | Max 0.99
Coloring options: