Motif HL_58751.1 Version HL_58751.1 of this group appears in releases 0.1 to 0.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1ZSE_001 | 1ZSE | 0.5093 | 2 | R | RNA HAIRPIN | C | 309||||P_1 | A | 311||||P_1 | G | 313||||P_1 | cWW | |
| 2 | HL_6MSF_001 | 6MSF | 0.0000 | 2 | Mini UNCG | R | RNA (14-mer) | G | 6||||P_1 | C | 8||||P_1 | C | 10||||P_1 | cWW |
| 3 | HL_2B2D_001 | 2B2D | 0.1871 | 2 | R | RNA (20-mer) | C | 309||||P_1 | A | 311||||P_1 | G | 313||||P_1 | cWW | |
| 4 | HL_2ZJR_039 | 2ZJR | 0.3476 | 1 | Mini UNCG (H) | X | LSU rRNA | C | 1581 | A | 1583 | G | 1584 | cWW |
| 5 | HL_2QBG_041 | 2QBG | 0.3230 | 1 | B | 23S rRNA | C | 1565 | G | 1567 | G | 1568 | cWW | |
| 6 | HL_1S72_021 | 1S72 | 0.2447 | 1 | Mini UNCG (H) | 0 | LSU rRNA | C | 712 | U | 714 | G | 716 | cWW |
| 7 | HL_2OZB_001 | 2OZB | 0.2821 | 4 | C | RNA comprising the 5' Stem-Loop RNA of U4snRNA | G | 35 | A | 39 | C | 41 | cWW | |
| 8 | HL_3PYO_039 | 3PYO | 0.3468 | 1 | A | 23S ribosomal RNA | C | 1565 | A | 1567 | G | 1568 | cWW | |
| 9 | HL_1FJG_005 | 1FJG | 0.7807 | 2 | Mini UNCG (H) | A | SSU rRNA | C | 201 | U | 203 | G | 216 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAAG | 2 |
| CAAG | 2 |
| GUCAC | 1 |
| CAGG | 1 |
| CUUG | 1 |
| GUUUAUC | 1 |
| CUUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAA | 2 |
| AA | 2 |
| UCA | 1 |
| AG | 1 |
| UU | 1 |
| UUUAU | 1 |
| UUU | 1 |
Release history
| Release | 0.1 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_58751.1 | Only in the child motif |
|---|---|---|---|
| HL_58751.2 Compare | HL_1ZSE_001, HL_2B2D_001, HL_2ZJR_039, HL_3PYO_039, HL_2QBG_041, HL_2OZB_001, HL_6MSF_001, HL_1FJG_005 | HL_1S72_021 |
- Annotations
-
- (5)
- Mini UNCG (H) (3)
- Mini UNCG (1)
- Basepair signature
- Heat map statistics
- Min 0.07 | Avg 0.33 | Max 0.78
Coloring options: