Motif HL_58751.2 Version HL_58751.2 of this group appears in releases 0.2 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6MSF_001 | 6MSF | 0.0000 | 2 | Mini UNCG | R | G | 6||||P_1 | C | 8||||P_1 | C | 10||||P_1 | cWW |
| 2 | HL_1ZSE_001 | 1ZSE | 0.1871 | 2 | R | C | 309||||P_1 | A | 311||||P_1 | G | 313||||P_1 | cWW | |
| 3 | HL_2ZJR_039 | 2ZJR | 0.3476 | 1 | Mini UNCG (H) | X | C | 1581 | A | 1583 | G | 1584 | cWW |
| 4 | HL_2QBG_041 | 2QBG | 0.3230 | 1 | B | C | 1565 | G | 1567 | G | 1568 | cWW | |
| 5 | HL_2OZB_001 | 2OZB | 0.2447 | 4 | C | G | 35 | A | 39 | C | 41 | cWW | |
| 6 | HL_1FJG_005 | 1FJG | 0.2821 | 2 | Mini UNCG (H) | A | C | 201 | U | 203 | G | 216 | cWW |
| 7 | HL_3PYO_039 | 3PYO | 0.3468 | 1 | A | C | 1565 | A | 1567 | G | 1568 | cWW | |
| 8 | HL_2B2D_001 | 2B2D | 0.7807 | 2 | R | C | 309||||P_1 | A | 311||||P_1 | G | 313||||P_1 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAAG | 2 |
| CAAG | 2 |
| GUCAC | 1 |
| CAGG | 1 |
| GUUUAUC | 1 |
| CUUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAA | 2 |
| AA | 2 |
| UCA | 1 |
| AG | 1 |
| UUUAU | 1 |
| UUU | 1 |
Release history
| Release | 0.2 |
|---|---|
| Date | 2011-12-08 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_58751.2 | Only in the parent motif |
|---|---|---|---|
| HL_58751.1 Compare | HL_1ZSE_001, HL_2B2D_001, HL_2ZJR_039, HL_3PYO_039, HL_2QBG_041, HL_2OZB_001, HL_6MSF_001, HL_1FJG_005 | HL_1S72_021 |
Children motifs
| Child motif | Common motif instances | Only in HL_58751.2 | Only in the child motif |
|---|---|---|---|
| HL_42677.1 Compare | HL_1FJG_005, HL_1ZSE_001, HL_2B2D_001, HL_6MSF_001 | HL_3PYO_039, HL_2OZB_001, HL_2QBG_041, HL_2ZJR_039 | HL_6MSF_002, HL_4A1B_019 |
| HL_75759.1 Compare | HL_2QBG_041, HL_2ZJR_039 | HL_1ZSE_001, HL_2B2D_001, HL_3PYO_039, HL_1FJG_005, HL_2OZB_001, HL_6MSF_001 | HL_1S72_041, HL_4A1B_039, HL_3U5F_007, HL_3V2F_037, HL_3V2F_009, HL_2F8K_001, HL_3U5H_040, HL_3U5H_072 |
| HL_99779.1 Compare | HL_2OZB_001 | HL_1ZSE_001, HL_2B2D_001, HL_2ZJR_039, HL_1FJG_005, HL_2QBG_041, HL_3PYO_039, HL_6MSF_001 |
- Annotations
-
- (5)
- Mini UNCG (H) (2)
- Mini UNCG (1)
- Basepair signature
- Heat map statistics
- Min 0.07 | Avg 0.30 | Max 0.78
Coloring options: