Motif HL_60812.1 Version HL_60812.1 of this group appears in releases 3.80 to 3.85
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V9F_038 | 4V9F | 0.4678 | 0 | 0 | LSU rRNA | G | 1557 | C | 1558 | A | 1559 | U | 1560 | U | 1561 | C | 1562 | G | 1563 | C | 1564 | cWW | ncWW |
| 2 | HL_8C3A_037 | 8C3A | 0.0000 | 1 | 1 | LSU rRNA | G | 1676 | U | 1677 | U | 1678 | A | 1679 | U | 1680 | C | 1681 | U | 1682 | U | 1684 | cWW | ncwW |
| 3 | HL_5TBW_037 | 5TBW | 0.1229 | 1 | 1 | LSU rRNA | G | 1680 | U | 1681 | U | 1682 | A | 1683 | U | 1684 | C | 1685 | U | 1686 | U | 1688 | cWW | |
| 4 | HL_8C3A_225 | 8C3A | 0.7223 | 1 | CM | SSU rRNA | G | 1581 | U | 1582 | C | 1583 | A | 1584 | U | 1585 | C | 1586 | A | 1587 | C | 1589 | cWW | tWH |
| 5 | HL_4V88_220 | 4V88 | 0.8542 | 1 | A6 | SSU rRNA | G | 1594 | U | 1595 | C | 1596 | A | 1597 | U | 1598 | C | 1599 | A | 1600 | C | 1602 | cWW | ntWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUAUCUUU | 2 |
| GUCAUCAGC | 2 |
| GCAUUCGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAUCUU | 2 |
| UCAUCAG | 2 |
| CAUUCG | 1 |
- Annotations
-
- (5)
- Basepair signature
- cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.12 | Avg 0.49 | Max 0.90
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