RNA 3D Hub //

Motif HL_60919.1 Version HL_60919.1 of this group appears in releases 2.0 to 2.0

#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 7 81-82-62-7
1 HL_3J7P_0553J7P0.488815 LSU rRNAC4193U4194G4196G4197G4198C4199G4200G4201cWW
2 HL_3J79_0543J790.39691A LSU rRNAC2955U2956G2958G2959G2960C2961G2962G2963cWW
3 HL_4V91_0554V910.393211 LSU rRNAC2616U2617G2619G2620G2621C2622G2623G2624cWW
4 HL_4V8P_2144V8P0.13521F1 LSU rRNAC2605U2606G2608G2609G2610C2611G2612G2613cWW
5 HL_5AN9_0145AN90.14671N LSU rRNAC2949U2950G2952G2953G2954C2955G2956G2957cWW
6 HL_4V9F_0554V9F0.120610 LSU rRNAC2281U2282G2284G2285G2286C2287G2288G2289cWW
7 HL_4IOA_0524IOA0.00001X LSU rRNAC2227U2228G2230G2231G2232C2233G2234G2235cWW
8 HL_4V88_1684V880.12221A5 LSU rRNAC2616U2617G2619G2620G2621C2622G2623G2624cWW
9 HL_4V19_0284V190.12261A LSU rRNAU1146U1147G1149G1150G1151U1152G1153A1154cWW
10 HL_3J7Y_0293J7Y0.15991A LSU rRNAU2812U2813G2815G2816G2817C2818G2819A2820cWW
11 HL_3J9W_0893J9W0.15801BA LSU rRNAC2277U2278G2280G2281G2282C2283G2284G2285cWW
12 HL_5AJ0_0585AJ00.19231A2 LSU rRNAC4155U4156G4158G4159G4160C4161G4162G4163cWW
13 HL_3R4F_0043R4F0.49240ApRNAA51||||15_545U52||||15_545G53||||15_545G54||||15_545U55||||15_545U56||||15_545G57||||15_545U58||||15_545cWWncWW
14 HL_3R4F_0023R4F0.49240ApRNAA51U52G53G54U55U56G57U58cWWncWW
15 HL_4V84_1384V840.43920CVRNA (34-MER)U6185U6186A6187G6188G6189U6190A6191G6192cWW
16 HL_4XEJ_2104XEJ0.43740BIRE CrPV IRESU6161U6162A6163A6164G6165U6166G6167G6168cWW
17 HL_3RKF_0053RKF0.63070BGuanine riboswitchG46U47U48U49C50U51A52C53cWWntWH

3D structures

Complete motif including flanking bases
SequenceCounts
CUGGGGCGG10
AUGGUUGU2
UUGGGGUGA1
UUGGGGCGA1
UUAGGUAG1
UUAAGUGG1
GUUUCUAC1
Non-Watson-Crick part of the motif
SequenceCounts
UGGGGCG11
UGGUUG2
UGGGGUG1
UAGGUA1
UAAGUG1
UUUCUA1

Release history

Release2.0
Date2017-04-24
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (17)
    • Basepair signature
    cWW-R-R-R-R-R
    Heat map statistics
    Min 0.09 | Avg 0.40 | Max 0.76
    Help

    Coloring options:

    HL_3J7P_055:HL_3J7P_055 = 0HL_3J7P_055:HL_3J79_054 = 0.3683HL_3J7P_055:HL_4V91_055 = 0.384HL_3J7P_055:HL_4V8P_214 = 0.4791HL_3J7P_055:HL_5AN9_014 = 0.5146HL_3J7P_055:HL_4V9F_055 = 0.5017HL_3J7P_055:HL_4IOA_052 = 0.4888HL_3J7P_055:HL_4V88_168 = 0.4738HL_3J7P_055:HL_4V19_028 = 0.497HL_3J7P_055:HL_3J7Y_029 = 0.4912HL_3J7P_055:HL_3J9W_089 = 0.5217HL_3J7P_055:HL_5AJ0_058 = 0.5135HL_3J7P_055:HL_3R4F_004 = 0.6837HL_3J7P_055:HL_3R4F_002 = 0.6837HL_3J7P_055:HL_4V84_138 = 0.6602HL_3J7P_055:HL_4XEJ_210 = 0.623HL_3J7P_055:HL_3RKF_005 = 0.7593HL_3J79_054:HL_3J7P_055 = 0.3683HL_3J79_054:HL_3J79_054 = 0HL_3J79_054:HL_4V91_055 = 0.09HL_3J79_054:HL_4V8P_214 = 0.3901HL_3J79_054:HL_5AN9_014 = 0.3903HL_3J79_054:HL_4V9F_055 = 0.4025HL_3J79_054:HL_4IOA_052 = 0.3969HL_3J79_054:HL_4V88_168 = 0.3929HL_3J79_054:HL_4V19_028 = 0.4034HL_3J79_054:HL_3J7Y_029 = 0.4118HL_3J79_054:HL_3J9W_089 = 0.3844HL_3J79_054:HL_5AJ0_058 = 0.4099HL_3J79_054:HL_3R4F_004 = 0.6215HL_3J79_054:HL_3R4F_002 = 0.6215HL_3J79_054:HL_4V84_138 = 0.5764HL_3J79_054:HL_4XEJ_210 = 0.6123HL_3J79_054:HL_3RKF_005 = 0.7417HL_4V91_055:HL_3J7P_055 = 0.384HL_4V91_055:HL_3J79_054 = 0.09HL_4V91_055:HL_4V91_055 = 0HL_4V91_055:HL_4V8P_214 = 0.4223HL_4V91_055:HL_5AN9_014 = 0.3827HL_4V91_055:HL_4V9F_055 = 0.4048HL_4V91_055:HL_4IOA_052 = 0.3932HL_4V91_055:HL_4V88_168 = 0.3861HL_4V91_055:HL_4V19_028 = 0.414HL_4V91_055:HL_3J7Y_029 = 0.4031HL_4V91_055:HL_3J9W_089 = 0.3833HL_4V91_055:HL_5AJ0_058 = 0.4195HL_4V91_055:HL_3R4F_004 = 0.6396HL_4V91_055:HL_3R4F_002 = 0.6396HL_4V91_055:HL_4V84_138 = 0.5822HL_4V91_055:HL_4XEJ_210 = 0.6216HL_4V91_055:HL_3RKF_005 = 0.7591HL_4V8P_214:HL_3J7P_055 = 0.4791HL_4V8P_214:HL_3J79_054 = 0.3901HL_4V8P_214:HL_4V91_055 = 0.4223HL_4V8P_214:HL_4V8P_214 = 0HL_4V8P_214:HL_5AN9_014 = 0.1105HL_4V8P_214:HL_4V9F_055 = 0.1481HL_4V8P_214:HL_4IOA_052 = 0.1352HL_4V8P_214:HL_4V88_168 = 0.1456HL_4V8P_214:HL_4V19_028 = 0.144HL_4V8P_214:HL_3J7Y_029 = 0.2199HL_4V8P_214:HL_3J9W_089 = 0.1845HL_4V8P_214:HL_5AJ0_058 = 0.2058HL_4V8P_214:HL_3R4F_004 = 0.517HL_4V8P_214:HL_3R4F_002 = 0.517HL_4V8P_214:HL_4V84_138 = 0.513HL_4V8P_214:HL_4XEJ_210 = 0.5073HL_4V8P_214:HL_3RKF_005 = 0.6758HL_5AN9_014:HL_3J7P_055 = 0.5146HL_5AN9_014:HL_3J79_054 = 0.3903HL_5AN9_014:HL_4V91_055 = 0.3827HL_5AN9_014:HL_4V8P_214 = 0.1105HL_5AN9_014:HL_5AN9_014 = 0HL_5AN9_014:HL_4V9F_055 = 0.1326HL_5AN9_014:HL_4IOA_052 = 0.1467HL_5AN9_014:HL_4V88_168 = 0.141HL_5AN9_014:HL_4V19_028 = 0.1566HL_5AN9_014:HL_3J7Y_029 = 0.2059HL_5AN9_014:HL_3J9W_089 = 0.1993HL_5AN9_014:HL_5AJ0_058 = 0.2218HL_5AN9_014:HL_3R4F_004 = 0.4931HL_5AN9_014:HL_3R4F_002 = 0.4931HL_5AN9_014:HL_4V84_138 = 0.4905HL_5AN9_014:HL_4XEJ_210 = 0.4973HL_5AN9_014:HL_3RKF_005 = 0.6677HL_4V9F_055:HL_3J7P_055 = 0.5017HL_4V9F_055:HL_3J79_054 = 0.4025HL_4V9F_055:HL_4V91_055 = 0.4048HL_4V9F_055:HL_4V8P_214 = 0.1481HL_4V9F_055:HL_5AN9_014 = 0.1326HL_4V9F_055:HL_4V9F_055 = 0HL_4V9F_055:HL_4IOA_052 = 0.1206HL_4V9F_055:HL_4V88_168 = 0.1315HL_4V9F_055:HL_4V19_028 = 0.1365HL_4V9F_055:HL_3J7Y_029 = 0.1997HL_4V9F_055:HL_3J9W_089 = 0.1818HL_4V9F_055:HL_5AJ0_058 = 0.1966HL_4V9F_055:HL_3R4F_004 = 0.442HL_4V9F_055:HL_3R4F_002 = 0.442HL_4V9F_055:HL_4V84_138 = 0.4722HL_4V9F_055:HL_4XEJ_210 = 0.4801HL_4V9F_055:HL_3RKF_005 = 0.6671HL_4IOA_052:HL_3J7P_055 = 0.4888HL_4IOA_052:HL_3J79_054 = 0.3969HL_4IOA_052:HL_4V91_055 = 0.3932HL_4IOA_052:HL_4V8P_214 = 0.1352HL_4IOA_052:HL_5AN9_014 = 0.1467HL_4IOA_052:HL_4V9F_055 = 0.1206HL_4IOA_052:HL_4IOA_052 = 0HL_4IOA_052:HL_4V88_168 = 0.1222HL_4IOA_052:HL_4V19_028 = 0.1226HL_4IOA_052:HL_3J7Y_029 = 0.1599HL_4IOA_052:HL_3J9W_089 = 0.158HL_4IOA_052:HL_5AJ0_058 = 0.1923HL_4IOA_052:HL_3R4F_004 = 0.4924HL_4IOA_052:HL_3R4F_002 = 0.4924HL_4IOA_052:HL_4V84_138 = 0.4392HL_4IOA_052:HL_4XEJ_210 = 0.4374HL_4IOA_052:HL_3RKF_005 = 0.6307HL_4V88_168:HL_3J7P_055 = 0.4738HL_4V88_168:HL_3J79_054 = 0.3929HL_4V88_168:HL_4V91_055 = 0.3861HL_4V88_168:HL_4V8P_214 = 0.1456HL_4V88_168:HL_5AN9_014 = 0.141HL_4V88_168:HL_4V9F_055 = 0.1315HL_4V88_168:HL_4IOA_052 = 0.1222HL_4V88_168:HL_4V88_168 = 0HL_4V88_168:HL_4V19_028 = 0.1337HL_4V88_168:HL_3J7Y_029 = 0.1737HL_4V88_168:HL_3J9W_089 = 0.1616HL_4V88_168:HL_5AJ0_058 = 0.1992HL_4V88_168:HL_3R4F_004 = 0.4703HL_4V88_168:HL_3R4F_002 = 0.4703HL_4V88_168:HL_4V84_138 = 0.4694HL_4V88_168:HL_4XEJ_210 = 0.4645HL_4V88_168:HL_3RKF_005 = 0.6498HL_4V19_028:HL_3J7P_055 = 0.497HL_4V19_028:HL_3J79_054 = 0.4034HL_4V19_028:HL_4V91_055 = 0.414HL_4V19_028:HL_4V8P_214 = 0.144HL_4V19_028:HL_5AN9_014 = 0.1566HL_4V19_028:HL_4V9F_055 = 0.1365HL_4V19_028:HL_4IOA_052 = 0.1226HL_4V19_028:HL_4V88_168 = 0.1337HL_4V19_028:HL_4V19_028 = 0HL_4V19_028:HL_3J7Y_029 = 0.1663HL_4V19_028:HL_3J9W_089 = 0.1372HL_4V19_028:HL_5AJ0_058 = 0.1682HL_4V19_028:HL_3R4F_004 = 0.4967HL_4V19_028:HL_3R4F_002 = 0.4967HL_4V19_028:HL_4V84_138 = 0.514HL_4V19_028:HL_4XEJ_210 = 0.4988HL_4V19_028:HL_3RKF_005 = 0.6477HL_3J7Y_029:HL_3J7P_055 = 0.4912HL_3J7Y_029:HL_3J79_054 = 0.4118HL_3J7Y_029:HL_4V91_055 = 0.4031HL_3J7Y_029:HL_4V8P_214 = 0.2199HL_3J7Y_029:HL_5AN9_014 = 0.2059HL_3J7Y_029:HL_4V9F_055 = 0.1997HL_3J7Y_029:HL_4IOA_052 = 0.1599HL_3J7Y_029:HL_4V88_168 = 0.1737HL_3J7Y_029:HL_4V19_028 = 0.1663HL_3J7Y_029:HL_3J7Y_029 = 0HL_3J7Y_029:HL_3J9W_089 = 0.168HL_3J7Y_029:HL_5AJ0_058 = 0.2205HL_3J7Y_029:HL_3R4F_004 = 0.5327HL_3J7Y_029:HL_3R4F_002 = 0.5327HL_3J7Y_029:HL_4V84_138 = 0.4553HL_3J7Y_029:HL_4XEJ_210 = 0.4317HL_3J7Y_029:HL_3RKF_005 = 0.608HL_3J9W_089:HL_3J7P_055 = 0.5217HL_3J9W_089:HL_3J79_054 = 0.3844HL_3J9W_089:HL_4V91_055 = 0.3833HL_3J9W_089:HL_4V8P_214 = 0.1845HL_3J9W_089:HL_5AN9_014 = 0.1993HL_3J9W_089:HL_4V9F_055 = 0.1818HL_3J9W_089:HL_4IOA_052 = 0.158HL_3J9W_089:HL_4V88_168 = 0.1616HL_3J9W_089:HL_4V19_028 = 0.1372HL_3J9W_089:HL_3J7Y_029 = 0.168HL_3J9W_089:HL_3J9W_089 = 0HL_3J9W_089:HL_5AJ0_058 = 0.1454HL_3J9W_089:HL_3R4F_004 = 0.502HL_3J9W_089:HL_3R4F_002 = 0.502HL_3J9W_089:HL_4V84_138 = 0.5182HL_3J9W_089:HL_4XEJ_210 = 0.5099HL_3J9W_089:HL_3RKF_005 = 0.6702HL_5AJ0_058:HL_3J7P_055 = 0.5135HL_5AJ0_058:HL_3J79_054 = 0.4099HL_5AJ0_058:HL_4V91_055 = 0.4195HL_5AJ0_058:HL_4V8P_214 = 0.2058HL_5AJ0_058:HL_5AN9_014 = 0.2218HL_5AJ0_058:HL_4V9F_055 = 0.1966HL_5AJ0_058:HL_4IOA_052 = 0.1923HL_5AJ0_058:HL_4V88_168 = 0.1992HL_5AJ0_058:HL_4V19_028 = 0.1682HL_5AJ0_058:HL_3J7Y_029 = 0.2205HL_5AJ0_058:HL_3J9W_089 = 0.1454HL_5AJ0_058:HL_5AJ0_058 = 0HL_5AJ0_058:HL_3R4F_004 = 0.5044HL_5AJ0_058:HL_3R4F_002 = 0.5044HL_5AJ0_058:HL_4V84_138 = 0.5319HL_5AJ0_058:HL_4XEJ_210 = 0.5141HL_5AJ0_058:HL_3RKF_005 = 0.6335HL_3R4F_004:HL_3J7P_055 = 0.6837HL_3R4F_004:HL_3J79_054 = 0.6215HL_3R4F_004:HL_4V91_055 = 0.6396HL_3R4F_004:HL_4V8P_214 = 0.517HL_3R4F_004:HL_5AN9_014 = 0.4931HL_3R4F_004:HL_4V9F_055 = 0.442HL_3R4F_004:HL_4IOA_052 = 0.4924HL_3R4F_004:HL_4V88_168 = 0.4703HL_3R4F_004:HL_4V19_028 = 0.4967HL_3R4F_004:HL_3J7Y_029 = 0.5327HL_3R4F_004:HL_3J9W_089 = 0.502HL_3R4F_004:HL_5AJ0_058 = 0.5044HL_3R4F_004:HL_3R4F_004 = 0HL_3R4F_004:HL_3R4F_002 = 0HL_3R4F_004:HL_4V84_138 = 0.6101HL_3R4F_004:HL_4XEJ_210 = 0.6427HL_3R4F_004:HL_3RKF_005 = 0.7452HL_3R4F_002:HL_3J7P_055 = 0.6837HL_3R4F_002:HL_3J79_054 = 0.6215HL_3R4F_002:HL_4V91_055 = 0.6396HL_3R4F_002:HL_4V8P_214 = 0.517HL_3R4F_002:HL_5AN9_014 = 0.4931HL_3R4F_002:HL_4V9F_055 = 0.442HL_3R4F_002:HL_4IOA_052 = 0.4924HL_3R4F_002:HL_4V88_168 = 0.4703HL_3R4F_002:HL_4V19_028 = 0.4967HL_3R4F_002:HL_3J7Y_029 = 0.5327HL_3R4F_002:HL_3J9W_089 = 0.502HL_3R4F_002:HL_5AJ0_058 = 0.5044HL_3R4F_002:HL_3R4F_004 = 0HL_3R4F_002:HL_3R4F_002 = 0HL_3R4F_002:HL_4V84_138 = 0.6101HL_3R4F_002:HL_4XEJ_210 = 0.6427HL_3R4F_002:HL_3RKF_005 = 0.7452HL_4V84_138:HL_3J7P_055 = 0.6602HL_4V84_138:HL_3J79_054 = 0.5764HL_4V84_138:HL_4V91_055 = 0.5822HL_4V84_138:HL_4V8P_214 = 0.513HL_4V84_138:HL_5AN9_014 = 0.4905HL_4V84_138:HL_4V9F_055 = 0.4722HL_4V84_138:HL_4IOA_052 = 0.4392HL_4V84_138:HL_4V88_168 = 0.4694HL_4V84_138:HL_4V19_028 = 0.514HL_4V84_138:HL_3J7Y_029 = 0.4553HL_4V84_138:HL_3J9W_089 = 0.5182HL_4V84_138:HL_5AJ0_058 = 0.5319HL_4V84_138:HL_3R4F_004 = 0.6101HL_4V84_138:HL_3R4F_002 = 0.6101HL_4V84_138:HL_4V84_138 = 0HL_4V84_138:HL_4XEJ_210 = 0.2408HL_4V84_138:HL_3RKF_005 = 0.6212HL_4XEJ_210:HL_3J7P_055 = 0.623HL_4XEJ_210:HL_3J79_054 = 0.6123HL_4XEJ_210:HL_4V91_055 = 0.6216HL_4XEJ_210:HL_4V8P_214 = 0.5073HL_4XEJ_210:HL_5AN9_014 = 0.4973HL_4XEJ_210:HL_4V9F_055 = 0.4801HL_4XEJ_210:HL_4IOA_052 = 0.4374HL_4XEJ_210:HL_4V88_168 = 0.4645HL_4XEJ_210:HL_4V19_028 = 0.4988HL_4XEJ_210:HL_3J7Y_029 = 0.4317HL_4XEJ_210:HL_3J9W_089 = 0.5099HL_4XEJ_210:HL_5AJ0_058 = 0.5141HL_4XEJ_210:HL_3R4F_004 = 0.6427HL_4XEJ_210:HL_3R4F_002 = 0.6427HL_4XEJ_210:HL_4V84_138 = 0.2408HL_4XEJ_210:HL_4XEJ_210 = 0HL_4XEJ_210:HL_3RKF_005 = 0.4941HL_3RKF_005:HL_3J7P_055 = 0.7593HL_3RKF_005:HL_3J79_054 = 0.7417HL_3RKF_005:HL_4V91_055 = 0.7591HL_3RKF_005:HL_4V8P_214 = 0.6758HL_3RKF_005:HL_5AN9_014 = 0.6677HL_3RKF_005:HL_4V9F_055 = 0.6671HL_3RKF_005:HL_4IOA_052 = 0.6307HL_3RKF_005:HL_4V88_168 = 0.6498HL_3RKF_005:HL_4V19_028 = 0.6477HL_3RKF_005:HL_3J7Y_029 = 0.608HL_3RKF_005:HL_3J9W_089 = 0.6702HL_3RKF_005:HL_5AJ0_058 = 0.6335HL_3RKF_005:HL_3R4F_004 = 0.7452HL_3RKF_005:HL_3R4F_002 = 0.7452HL_3RKF_005:HL_4V84_138 = 0.6212HL_3RKF_005:HL_4XEJ_210 = 0.4941HL_3RKF_005:HL_3RKF_005 = 0HL_3J7P_055HL_3J79_054HL_4V91_055HL_4V8P_214HL_5AN9_014HL_4V9F_055HL_4IOA_052HL_4V88_168HL_4V19_028HL_3J7Y_029HL_3J9W_089HL_5AJ0_058HL_3R4F_004HL_3R4F_002HL_4V84_138HL_4XEJ_210HL_3RKF_005Discrepancy0.000.200.400.60
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