Motif HL_60919.1 Version HL_60919.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-6 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3J7P_055 | 3J7P | 0.4888 | 1 | 5 | LSU rRNA | C | 4193 | U | 4194 | G | 4196 | G | 4197 | G | 4198 | C | 4199 | G | 4200 | G | 4201 | cWW | |||
| 2 | HL_3J79_054 | 3J79 | 0.3969 | 1 | A | LSU rRNA | C | 2955 | U | 2956 | G | 2958 | G | 2959 | G | 2960 | C | 2961 | G | 2962 | G | 2963 | cWW | |||
| 3 | HL_4V91_055 | 4V91 | 0.3932 | 1 | 1 | LSU rRNA | C | 2616 | U | 2617 | G | 2619 | G | 2620 | G | 2621 | C | 2622 | G | 2623 | G | 2624 | cWW | |||
| 4 | HL_4V8P_214 | 4V8P | 0.1352 | 1 | F1 | LSU rRNA | C | 2605 | U | 2606 | G | 2608 | G | 2609 | G | 2610 | C | 2611 | G | 2612 | G | 2613 | cWW | |||
| 5 | HL_5AN9_014 | 5AN9 | 0.1467 | 1 | N | LSU rRNA | C | 2949 | U | 2950 | G | 2952 | G | 2953 | G | 2954 | C | 2955 | G | 2956 | G | 2957 | cWW | |||
| 6 | HL_4V9F_055 | 4V9F | 0.1206 | 1 | LSU P loop | 0 | LSU rRNA | C | 2281 | U | 2282 | G | 2284 | G | 2285 | G | 2286 | C | 2287 | G | 2288 | G | 2289 | cWW | ||
| 7 | HL_4IOA_052 | 4IOA | 0.0000 | 1 | LSU P loop (H) | X | LSU rRNA | C | 2227 | U | 2228 | G | 2230 | G | 2231 | G | 2232 | C | 2233 | G | 2234 | G | 2235 | cWW | ||
| 8 | HL_4V88_168 | 4V88 | 0.1222 | 1 | A5 | LSU rRNA | C | 2616 | U | 2617 | G | 2619 | G | 2620 | G | 2621 | C | 2622 | G | 2623 | G | 2624 | cWW | |||
| 9 | HL_4V19_028 | 4V19 | 0.1226 | 1 | A | LSU rRNA | U | 1146 | U | 1147 | G | 1149 | G | 1150 | G | 1151 | U | 1152 | G | 1153 | A | 1154 | cWW | |||
| 10 | HL_3J7Y_029 | 3J7Y | 0.1599 | 1 | A | LSU rRNA | U | 2812 | U | 2813 | G | 2815 | G | 2816 | G | 2817 | C | 2818 | G | 2819 | A | 2820 | cWW | |||
| 11 | HL_3J9W_089 | 3J9W | 0.1580 | 1 | BA | LSU rRNA | C | 2277 | U | 2278 | G | 2280 | G | 2281 | G | 2282 | C | 2283 | G | 2284 | G | 2285 | cWW | |||
| 12 | HL_5AJ0_058 | 5AJ0 | 0.1923 | 1 | A2 | LSU rRNA | C | 4155 | U | 4156 | G | 4158 | G | 4159 | G | 4160 | C | 4161 | G | 4162 | G | 4163 | cWW | |||
| 13 | HL_3R4F_004 | 3R4F | 0.4924 | 0 | A | pRNA | A | 51||||15_545 | U | 52||||15_545 | G | 53||||15_545 | G | 54||||15_545 | U | 55||||15_545 | U | 56||||15_545 | G | 57||||15_545 | U | 58||||15_545 | cWW | ncWW | ||
| 14 | HL_3R4F_002 | 3R4F | 0.4924 | 0 | A | pRNA | A | 51 | U | 52 | G | 53 | G | 54 | U | 55 | U | 56 | G | 57 | U | 58 | cWW | ncWW | ||
| 15 | HL_4V84_138 | 4V84 | 0.4392 | 0 | CV | RNA (34-MER) | U | 6185 | U | 6186 | A | 6187 | G | 6188 | G | 6189 | U | 6190 | A | 6191 | G | 6192 | cWW | |||
| 16 | HL_4XEJ_210 | 4XEJ | 0.4374 | 0 | BIRE | CrPV IRES | U | 6161 | U | 6162 | A | 6163 | A | 6164 | G | 6165 | U | 6166 | G | 6167 | G | 6168 | cWW | |||
| 17 | HL_3RKF_005 | 3RKF | 0.6307 | 0 | B | Purine riboswitch | G | 46 | U | 47 | U | 48 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ntWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGGGGCGG | 10 |
| AUGGUUGU | 2 |
| UUGGGGUGA | 1 |
| UUGGGGCGA | 1 |
| UUAGGUAG | 1 |
| UUAAGUGG | 1 |
| GUUUCUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGGGGCG | 11 |
| UGGUUG | 2 |
| UGGGGUG | 1 |
| UAGGUA | 1 |
| UAAGUG | 1 |
| UUUCUA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (15)
- LSU P loop (H) (1)
- LSU P loop (1)
- Basepair signature
- cWW-R-R-R-R-R
- Heat map statistics
- Min 0.09 | Avg 0.40 | Max 0.76
Coloring options: