Motif HL_60938.1 Version HL_60938.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 3-10 | 4-9 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5J7L_216 | 5J7L | 0.0000 | 0 | AA | SSU rRNA | U | 1009 | U | 1010 | C | 1011 | A | 1012 | G | 1013 | A | 1014 | G | 1015 | A | 1016 | U | 1017 | G | 1018 | A | 1019 | G | 1020 | ncWW | ncWW | ncWW |
| 2 | HL_4WF9_068 | 4WF9 | 0.7989 | 0 | X | LSU rRNA | C | 280 | A | 281 | A | 282 | G | 283 | C | 284 | U | 285 | U | 286 | G | 287 | C | 288 | U | 289 | U | 290 | G | 291 | cWW | ncWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUCAGAGAUGAG | 1 |
| CAAGCUUGCUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCAGAGAUGA | 1 |
| AAGCUUGCUU | 1 |
- Annotations
-
- (2)
- Basepair signature
- cWW-cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.80 | Avg 0.40 | Max 0.80
Coloring options: