Motif HL_61547.3 Version HL_61547.3 of this group appears in releases 1.1 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4FY3_011 | 4FY3 | 0.5538 | 0 | 2 | RNA (17-mer) | A | 6 | U | 7 | U | 8 | U | 9 | U | 10 | U | 11 | cWW | |
| 2 | HL_4IOA_021 | 4IOA | 0.0000 | 2 | X | LSU rRNA | C | 725 | G | 726 | U | 727 | C | 730 | A | 731 | G | 732 | cWW | |
| 3 | HL_2QBG_032 | 2QBG | 0.8683 | 0 | B | 23S rRNA | C | 1172 | U | 1173 | U | 1174 | A | 1175 | U | 1176 | G | 1177 | cWW | |
| 4 | HL_1OOA_002 | 1OOA | 0.9022 | 0 | D | RNA aptamer | U | 13 | G | 14 | U | 15 | A | 16 | A | 17 | G | 18 | cWW | ncSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUUUUU | 1 |
| CGUGACAG | 1 |
| CUUAUG | 1 |
| UGUAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUUU | 1 |
| GUGACA | 1 |
| UUAU | 1 |
| GUAA | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|
| Date | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_61547.3 | Only in the parent motif |
|---|---|---|---|
| HL_61547.2 Compare | HL_4FY3_011, HL_2QBG_032, HL_1OOA_002 | HL_4IOA_021 |
Children motifs
| Child motif | Common motif instances | Only in HL_61547.3 | Only in the child motif |
|---|---|---|---|
| HL_61547.4 Compare | HL_1OOA_002, HL_2QBG_032, HL_4IOA_021 | HL_4FY3_011 | |
| HL_23971.1 Compare | HL_4FY3_011 | HL_4IOA_021, HL_2QBG_032, HL_1OOA_002 | HL_3U5H_076, HL_4A1C_003, HL_4IOA_018 |
- Annotations
-
- (4)
- Basepair signature
- cWW-R-R-R
- Heat map statistics
- Min 0.55 | Avg 0.62 | Max 0.93
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