Motif HL_23971.1 Version HL_23971.1 of this group appears in releases 1.5 to 1.8
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3U5H_076 | 3U5H | 0.0000 | 2 | 8 | C | 108 | A | 109 | C | 110 | U | 112 | G | 114 | cWW |
| 2 | HL_4A1C_003 | 4A1C | 0.3573 | 2 | 2 | C | 109 | A | 110 | A | 111 | U | 113 | G | 115 | cWW |
| 3 | HL_4FY3_011 | 4FY3 | 0.6305 | 1 | 2 | A | 6 | U | 7 | U | 8 | U | 10 | U | 11 | cWW |
| 4 | HL_4IOA_018 | 4IOA | 0.7845 | 1 | X | U | 622 | G | 623 | A | 624 | A | 626 | A | 627 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CACAUUG | 1 |
| CAAGUGG | 1 |
| AUUUUU | 1 |
| UGAAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACAUU | 1 |
| AAGUG | 1 |
| UUUU | 1 |
| GAAA | 1 |
Release history
| Release | 1.5 | 1.6 | 1.7 | 1.8 |
|---|---|---|---|---|
| Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 |
| Status | > 2 parents | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_23971.1 | Only in the parent motif |
|---|---|---|---|
| HL_12811.2 Compare | HL_3U5H_076, HL_4A1C_003 | HL_4FY3_011, HL_4IOA_018 | HL_2XZM_004, HL_3V2F_007, HL_4IOA_007 |
| HL_61547.3 Compare | HL_4FY3_011 | HL_3U5H_076, HL_4A1C_003, HL_4IOA_018 | HL_4IOA_021, HL_2QBG_032, HL_1OOA_002 |
| HL_31969.1 Compare | HL_4IOA_018 | HL_3U5H_076, HL_4A1C_003, HL_4FY3_011 |
Children motifs
| Child motif | Common motif instances | Only in HL_23971.1 | Only in the child motif |
|---|---|---|---|
| HL_82538.1 Compare | HL_3U5H_076, HL_4A1C_003 | HL_4FY3_011, HL_4IOA_018 | HL_3V2F_007, HL_4IOA_007, HL_4C9D_002 |
| HL_61547.5 Compare | HL_4FY3_011 | HL_3U5H_076, HL_4A1C_003, HL_4IOA_018 | HL_4IOA_021, HL_2QBG_032, HL_1OOA_002 |
| HL_79038.1 Compare | HL_4IOA_018 | HL_3U5H_076, HL_4A1C_003, HL_4FY3_011 |
Coloring options: