Motif HL_61849.1 Version HL_61849.1 of this group appears in releases 3.85 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V88_216 | 4V88 | 0.2964 | 2 | A6 | SSU rRNA | C | 1359 | A | 1360 | U | 1361 | G | 1364 | cWW |
| 2 | HL_4LFB_004 | 4LFB | 0.0000 | 2 | A | SSU rRNA | C | 190|||B | C | 190|||C | U | 190|||D | G | 190|||G | cWW |
| 3 | HL_6CZR_075 | 6CZR | 0.1514 | 2 | 1a | SSU rRNA | C | 187 | C | 188 | U | 189 | G | 192 | cWW |
| 4 | HL_6XH2_001 | 6XH2 | 0.1849 | 1 | D | TRANS-ACTIVATION RESPONSE ELEMENT | C | 30 | U | 31 | G | 32 | G | 34 | cWW |
| 5 | HL_2Y9H_007 | 2Y9H | 0.3296 | 2 | N | RNA (19-mer) | C | 11 | G | 12 | C | 13 | G | 16 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUUGG | 2 |
| CAUUUG | 1 |
| CUGGG | 1 |
| CGCGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUUG | 2 |
| AUUU | 1 |
| UGG | 1 |
| GCGU | 1 |
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