Motif HL_61849.1 Version HL_61849.1 of this group appears in releases 3.85 to 3.88

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4	1-4
1	HL_4V88_216	4V88	0.2964	2	A6	SSU rRNA	C	1359	A	1360	U	1361	G	1364	cWW
2	HL_4LFB_004	4LFB	0.0000	2	A	SSU rRNA	C	190\|\|\|B	C	190\|\|\|C	U	190\|\|\|D	G	190\|\|\|G	cWW
3	HL_6CZR_075	6CZR	0.1514	2	1a	SSU rRNA	C	187	C	188	U	189	G	192	cWW
4	HL_6XH2_001	6XH2	0.1849	1	D	TRANS-ACTIVATION RESPONSE ELEMENT	C	30	U	31	G	32	G	34	cWW
5	HL_2Y9H_007	2Y9H	0.3296	2	N	RNA (19-mer)	C	11	G	12	C	13	G	16	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CCUUGG	2
CAUUUG	1
CUGGG	1
CGCGUG	1

Non-Watson-Crick part of the motif

Sequence	Counts
CUUG	2
AUUU	1
UGG	1
GCGU	1

Release history

Release	3.85	3.86	3.87	3.88
Date	2024-06-19	2024-07-17	2024-08-14	2024-09-11
Status	New id, 1 parent	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (5)
Basepair signature: cWW-F-F
Heat map statistics: Min 0.15 | Avg 0.26 | Max 0.55

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