Motif HL_61951.1 Version HL_61951.1 of this group appears in releases 0.1 to 0.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2ZJR_034 | 2ZJR | 0.7788 | 0 | GNRA variation (H) | X | LSU rRNA | C | 1376 | G | 1377 | A | 1378 | A | 1379 | C | 1380 | G | 1381 | cWW | |
| 2 | HL_2XZM_024 | 2XZM | 0.7735 | 0 | A | 18S RRNA | C | 1094 | G | 1095 | C | 1096 | A | 1097 | A | 1098 | G | 1099 | cWW | ntsS | |
| 3 | HL_3O58_036 | 3O58 | 0.7273 | 0 | 1 | 25S ribosomal RNA | G | 1634 | G | 1635 | U | 1636 | A | 1637 | A | 1638 | C | 1639 | cWW | ||
| 4 | HL_3Q1Q_010 | 3Q1Q | 0.7846 | 0 | C | TRNA (PHE) | G | 37 | C | 38 | A | 39 | C | 40 | C | 41 | C | 42 | cWW | ntWH | |
| 5 | HL_1S72_022 | 1S72 | 0.7125 | 0 | GNRA (H) | 0 | LSU rRNA | U | 733 | U | 734 | C | 735 | A | 736 | A | 737 | G | 738 | cWW | |
| 6 | HL_2AW7_013 | 2AW7 | 0.9913 | 0 | A | 16S ribosomal RNA | C | 522 | A | 523 | G | 524 | C | 525 | C | 526 | G | 527 | cWW | ||
| 7 | HL_3O30_036 | 3O30 | 0.9294 | 0 | 1 | 18S ribosomal RNA | G | 1778 | U | 1779 | G | 1780 | A | 1781 | A | 1782 | C | 1783 | cWW | ||
| 8 | HL_1FJG_013 | 1FJG | 0.8911 | 0 | A | SSU rRNA | C | 522 | A | 523 | G | 524 | C | 525 | C | 526 | G | 527 | cWW | ||
| 9 | HL_2ZJR_004 | 2ZJR | 0.7255 | 0 | X | LSU rRNA | C | 133 | G | 134 | U | 135 | A | 136 | A | 137 | G | 138 | cWW | ||
| 10 | HL_2XZM_034 | 2XZM | 0.8188 | 0 | A | 18S RRNA | A | 1660 | G | 1661 | C | 1662 | A | 1663 | A | 1664 | U | 1665 | cWW | ||
| 11 | HL_2XZM_035 | 2XZM | 0.8320 | 0 | A | 18S RRNA | G | 1731 | U | 1732 | G | 1733 | A | 1734 | A | 1735 | C | 1736 | cWW | ||
| 12 | HL_3O30_003 | 3O30 | 0.7763 | 1 | 1 | 18S ribosomal RNA | G | 154 | U | 155 | A | 156 | A | 157 | U | 158 | C | 160 | cWW | ||
| 13 | HL_3O58_012 | 3O58 | 0.7105 | 0 | 1 | 25S ribosomal RNA | C | 543 | C | 544 | U | 545 | C | 546 | G | 547 | G | 548 | cWW | ||
| 14 | HL_1U6B_004 | 1U6B | 0.7450 | 0 | GNRA variation | B | 197-MER | C | 153 | A | 154 | A | 155 | A | 156 | C | 157 | G | 158 | cWW | |
| 15 | HL_3O58_011 | 3O58 | 0.6131 | 0 | 1 | 25S ribosomal RNA | U | 382 | G | 383 | A | 384 | A | 385 | A | 386 | A | 387 | cWW | ||
| 16 | HL_3O58_019 | 3O58 | 0.6156 | 0 | 1 | 25S ribosomal RNA | G | 844 | G | 845 | A | 846 | A | 847 | A | 848 | C | 849 | cWW | ||
| 17 | HL_1S72_036 | 1S72 | 0.5364 | 1 | GNRA (H) | 0 | LSU rRNA | G | 1468 | C | 1469 | A | 1470 | A | 1471 | C | 1472 | C | 1474 | cWW | tSHa |
| 18 | HL_3AM1_002 | 3AM1 | 0.4026 | 0 | GNRA variation | B | ASL-truncated tRNA | C | 32 | U | 33 | U | 34 | C | 35 | G | 36 | G | 37 | cWW | |
| 19 | HL_3O58_013 | 3O58 | 0.2516 | 0 | 1 | 25S ribosomal RNA | C | 599 | G | 600 | U | 601 | A | 602 | A | 603 | G | 604 | cWW | ||
| 20 | HL_3Q1Q_002 | 3Q1Q | 0.0000 | 1 | B | RNase P RNA | G | 77 | U | 78 | A | 79 | A | 80 | C | 81 | C | 83 | cWW | ||
| 21 | HL_3O58_039 | 3O58 | 0.5316 | 0 | 1 | 25S ribosomal RNA | A | 1760 | C | 1761 | C | 1762 | U | 1763 | U | 1764 | U | 1765 | cWW | ||
| 22 | HL_3O58_047 | 3O58 | 0.5853 | 1 | 1 | 25S ribosomal RNA | A | 2164 | G | 2165 | A | 2166 | A | 2167 | A | 2168 | U | 2170 | cWW | ||
| 23 | HL_2XZM_009 | 2XZM | 0.7927 | 0 | A | 18S RRNA | U | 359 | U | 360 | A | 361 | G | 362 | G | 363 | G | 364 | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGCCG | 2 |
| GUGAAC | 2 |
| CGUAAG | 2 |
| CGAACG | 1 |
| CGCAAG | 1 |
| GGUAAC | 1 |
| GCACCC | 1 |
| UUCAAG | 1 |
| AGCAAU | 1 |
| GUAAUUC | 1 |
| CCUCGG | 1 |
| CAAACG | 1 |
| UGAAAA | 1 |
| GGAAAC | 1 |
| GCAACUC | 1 |
| CUUCGG | 1 |
| GUAACGC | 1 |
| ACCUUU | 1 |
| AGAAAGU | 1 |
| UUAGGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAA | 3 |
| GCAA | 2 |
| AGCC | 2 |
| UGAA | 2 |
| GAAA | 2 |
| GAAC | 1 |
| CACC | 1 |
| UCAA | 1 |
| UAAUU | 1 |
| CUCG | 1 |
| AAAC | 1 |
| CAACU | 1 |
| UUCG | 1 |
| UAACG | 1 |
| CCUU | 1 |
| GAAAG | 1 |
| UAGG | 1 |
Release history
| Release | 0.1 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_61951.1 | Only in the child motif |
|---|---|---|---|
| HL_47025.1 Compare | HL_3O30_036, HL_2XZM_024, HL_2XZM_009, HL_3O58_013, HL_3O58_012, HL_3O58_036, HL_3O58_019, HL_3O58_039, HL_2ZJR_034, HL_1S72_036, HL_1FJG_013, HL_3Q1Q_010, HL_3AM1_002, HL_1U6B_004, HL_2XZM_035, HL_2XZM_034, HL_3O58_047, HL_2ZJR_004, HL_1S72_022, HL_3O30_003, HL_2AW7_013, HL_3Q1Q_002 | HL_3O58_011 | HL_3O58_002, HL_1S72_045, HL_3O58_025 |
| HL_07320.2 Compare | HL_3O58_011 | HL_3O30_036, HL_2XZM_024, HL_2XZM_009, HL_3O58_013, HL_3O58_012, HL_3O58_036, HL_3O58_019, HL_3O58_039, HL_2ZJR_034, HL_1S72_036, HL_1FJG_013, HL_3Q1Q_010, HL_3AM1_002, HL_1U6B_004, HL_2XZM_035, HL_2XZM_034, HL_3O58_047, HL_2ZJR_004, HL_1S72_022, HL_3O30_003, HL_2AW7_013, HL_3Q1Q_002 | HL_2QBG_022, HL_3O58_042, HL_3PYO_038, HL_3O30_008, HL_1S72_016, HL_3PYO_021 |
- Annotations
-
- (18)
- GNRA (H) (2)
- GNRA variation (2)
- GNRA variation (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.09 | Avg 0.66 | Max 0.99
Coloring options: